Index

A

add() (Components method) (Parameters method) (UidSet method) add_calibration() (MCADetectorStrainAnalysis method) add_data_point() (SetupNXdataProcessor method) add_material() (Material method) (MaterialParamSelector method) add_model() (Fit method) add_parameter() (Fit method) add_points() (StrainAnalysisProcessor static method) ai (AzimuthalIntegratorConfig property) ais (MultiGeometryConfig attribute) all_any() (in module CHAP.utils.general) all_scalar_data (MapConfig property) almost_equal() (in module CHAP.utils.general) animation (ImageProcessorConfig attribute) append (TXTWriter attribute) args (Pipeline attribute) assert_no_duplicate_attr_in_list_of_objs() (in module CHAP.utils.general)

assert_no_duplicate_key_in_list_of_dicts() (in module CHAP.utils.general) assert_no_duplicates_in_list_of_dicts() (in module CHAP.utils.general) AsyncProcessor (class in CHAP.common.processor) attrs (BaselineConfig attribute) (Detector attribute) (Integrate1dConfig attribute) (Integrate2dConfig attribute) (MapConfig attribute) axis (ImageProcessorConfig attribute) azimuth_range (MultiGeometryConfig attribute) azimuthal_integrator (Detector property) azimuthal_integrator() (in module CHAP.common.models.integration) azimuthal_integrators (GiwaxsConversionConfig attribute) (PyfaiIntegrationConfig attribute) azimuthal_max (IntegrationConfig attribute) azimuthal_min (IntegrationConfig attribute) azimuthal_npt (IntegrationConfig attribute) azimuthal_units (IntegrationConfig attribute) AzimuthalIntegratorConfig (class in CHAP.giwaxs.models)

B

background (FitConfig attribute) background_intensity (TomoSimConfig attribute) backgroundpeaks (FitConfig attribute) BaseEddProcessor (class in CHAP.edd.processor) baseline (FitConfig attribute) baseline_arPLS() (in module CHAP.utils.general) BaselineConfig (class in CHAP.edd.models) BaseStrainProcessor (class in CHAP.edd.processor) beam_intensity (TomoSimConfig attribute) best_errors (Fit property) (FitMap property)

best_fit (Fit property) (FitMap property) best_parameters (Fit property) best_parameters() (FitMap method) best_values (Fit property) (FitMap property) BinarizeProcessor (class in CHAP.common.processor) BinarizeProcessorConfig (class in CHAP.common.models.common) BinaryFileReader (class in CHAP.common.reader)

C

calibrate_center (TomoDataProcessor attribute) calibration_method (MCATthCalibrationConfig attribute) center_offset_max (TomoFindCenterConfig attribute) center_offset_min (TomoFindCenterConfig attribute) center_offsets (TomoFindCenterConfig attribute) center_rows (TomoFindCenterConfig attribute) center_search_range (TomoFindCenterConfig attribute) center_stack_index (TomoFindCenterConfig attribute) centers (Multipeak attribute) centers_range (FitConfig attribute) (MCADetectorStrainAnalysis attribute) (Multipeak attribute) CHAP module CHAP.common module CHAP.common.models module CHAP.common.models.common module CHAP.common.models.integration module CHAP.common.models.map module CHAP.common.processor module CHAP.common.reader module CHAP.common.utils module CHAP.common.writer module CHAP.edd module CHAP.edd.models module CHAP.edd.processor module CHAP.edd.reader module CHAP.edd.select_material_params_gui module CHAP.edd.utils module CHAP.edd.writer module CHAP.foxden module CHAP.foxden.models module CHAP.foxden.processor module CHAP.foxden.reader module CHAP.foxden.utils module CHAP.foxden.writer module CHAP.giwaxs module CHAP.giwaxs.models module CHAP.giwaxs.processor module CHAP.giwaxs.reader module CHAP.giwaxs.writer module CHAP.models module CHAP.pipeline module CHAP.processor module CHAP.reader module CHAP.runner module CHAP.saxswaxs module

CHAP.saxswaxs.processor module CHAP.saxswaxs.reader module CHAP.saxswaxs.writer module CHAP.server module CHAP.TaskManager module CHAP.tomo module CHAP.tomo.models module CHAP.tomo.processor module CHAP.tomo.reader module CHAP.tomo.writer module CHAP.utils module CHAP.utils.converters module CHAP.utils.fit module CHAP.utils.general module CHAP.utils.material module CHAP.utils.models module CHAP.utils.parfile module CHAP.writer module CHAPBaseModel (class in CHAP.models) chi_disc (MultiGeometryConfig attribute) chisqr (Fit property) (FitMap property) clear() (TaskManager method) clear_fields() (MaterialParamSelector method) code (FitConfig attribute) columns (Detector attribute) (LinkamReader attribute) combine_data (TomoDataProcessor attribute) combine_data() (Tomo method) Component (class in CHAP.utils.fit) Components (class in CHAP.utils.fit) components (Components property) (Fit property) (FitMap property) config (DiffractionVolumeLengthProcessor attribute) (LatticeParameterRefinementProcessor attribute) (MapProcessor attribute) (MCAEnergyCalibrationProcessor attribute) (MCATthCalibrationProcessor attribute) (SpecReader attribute) (StrainAnalysisProcessor attribute) ConfigReader (class in CHAP.common.reader) Constant (class in CHAP.utils.models) constant() (in module CHAP.utils.models) construct_baseline() (ConstructBaseline static method) ConstructBaseline (class in CHAP.common.processor) convert_mask_ranges() (MCADetectorCalibration method) convert_nxdata() (UnstructuredToStructuredProcessor method) convert_q_rect() (GiwaxsConversionProcessor method) convert_sparse_dense() (in module CHAP.utils.converters) convert_structured_unstructured() (in module CHAP.utils.converters) convert_xarray_nexus() (in module CHAP.utils.converters) ConvertStructuredProcessor (class in CHAP.common.processor) coord_range (ImageProcessorConfig attribute) coords (MapConfig property) CorrectionsData (class in CHAP.common.models.map) covar (Fit property) (FitMap property) create_multipeak_model() (FitProcessor static method) curved_to_rect() (GiwaxsConversionProcessor static method)

D

daemon() (in module CHAP.server) data_type (CorrectionsData attribute) (PointByPointScanData attribute) dataset_id (EddMapReader attribute) (EddMPIMapReader attribute) (SetupNXdataReader attribute) default (FitParameter property) delta_theta (TomoReduceConfig attribute) depth_list() (in module CHAP.utils.general) depth_tuple() (in module CHAP.utils.general) description (Sample attribute) Detector (class in CHAP.common.models.integration) (class in CHAP.common.models.map) (class in CHAP.tomo.models) detector (TomoSimConfig attribute) detector_config (DiffractionVolumeLengthProcessor attribute) (LatticeParameterRefinementProcessor attribute) (MapProcessor attribute) (MCAEnergyCalibrationProcessor attribute) (MCATthCalibrationProcessor attribute) (SpecReader attribute) (StrainAnalysisProcessor attribute)

detector_ids (EddMPIMapReader attribute) (UpdateNXdataReader attribute) DetectorConfig (class in CHAP.common.models.map) detectors (DetectorConfig attribute) (IntegrationConfig attribute) (MCADetectorConfig attribute) (SetupNXdataReader attribute) dict() (CHAPBaseModel method) dictionary_update() (in module CHAP.utils.general) did (FoxdenRequestConfig attribute) (MapConfig attribute) DiffractionVolumeLengthConfig (class in CHAP.edd.models) DiffractionVolumeLengthProcessor (class in CHAP.edd.processor) dims (MapConfig property) discard() (UidSet method) ds_unique() (Material method) dvl (MCADetectorDiffractionVolumeLength attribute) dwell_time_actual (MapConfig attribute) DwellTimeActual (class in CHAP.common.models.map)

E

EddMapReader (class in CHAP.edd.reader) EddMPIMapReader (class in CHAP.edd.reader) empty (MultiGeometryConfig attribute) end (IndependentDimension attribute) energies (MCADetectorCalibration property) energy_calibration_coeffs (MCADetectorCalibration attribute) energy_mask_ranges (FitConfig attribute) environments() (in module CHAP.common.utils) error_model (Integrate1dConfig attribute) (Integrate2dConfig attribute) (IntegrationConfig attribute)

eval() (Fit method) eval_components() (ModelResult method) execute() (Pipeline method) (PipelineItem method) experiment_type (MapConfig attribute) (SpecConfig attribute) Exponential (class in CHAP.utils.models) exponential() (in module CHAP.utils.models) expr (Expression attribute) (FitParameter attribute) Expression (class in CHAP.utils.models) ExtractArchiveWriter (class in CHAP.common.writer)

F

FabioImageReader (class in CHAP.common.reader) fig_to_iobuf() (in module CHAP.utils.general) file_exists_and_readable() (in module CHAP.utils.general) fileformat (ImageProcessorConfig attribute) filename (ImageWriter attribute) (Reader attribute) (SpecReader attribute) (Writer attribute) FileTreeWriter (class in CHAP.common.writer) find_center (TomoDataProcessor attribute) find_centers() (Tomo method) find_peaks (StrainAnalysisConfig attribute) Fit (class in CHAP.utils.fit) fit() (Fit method) (FitMap method) fit_amplitude (MCADetectorDiffractionVolumeLength attribute) fit_center (MCADetectorDiffractionVolumeLength attribute) fit_report() (ModelResult method) fit_sigma (MCADetectorDiffractionVolumeLength attribute) fit_type (Multipeak attribute) FitConfig (class in CHAP.edd.models) (class in CHAP.utils.models) FitMap (class in CHAP.utils.fit) FitParameter (class in CHAP.utils.models) FitProcessor (class in CHAP.utils.fit)

flux_correction_interpolation_function() (MCACalibrationConfig method) flux_file (MCACalibrationConfig attribute) flux_file_energy_range() (MCACalibrationConfig method) (MCATthCalibrationConfig method) force_exit() (Worker method) force_overwrite (FileTreeWriter attribute) (ImageWriter attribute) (Writer attribute) FoxdenDataDiscoveryReader (class in CHAP.foxden.reader) FoxdenDoiWriter (class in CHAP.foxden.writer) FoxdenMetadataReader (class in CHAP.foxden.reader) FoxdenMetadataWriter (class in CHAP.foxden.writer) FoxdenProvenanceProcessor (class in CHAP.foxden.processor) FoxdenProvenanceReader (class in CHAP.foxden.reader) FoxdenProvenanceWriter (class in CHAP.foxden.writer) FoxdenRequestConfig (class in CHAP.foxden.models) FoxdenSpecScansReader (class in CHAP.foxden.reader) fps (MatplotlibAnimationWriter attribute) frame (FabioImageReader attribute) freemem() (FitMap method) fwhm_max (FitConfig attribute) (MCADetectorStrainAnalysis attribute) (Multipeak attribute) fwhm_min (FitConfig attribute) (MCADetectorStrainAnalysis attribute) (Multipeak attribute)

G

Gaussian (class in CHAP.utils.models) gaussian() (in module CHAP.utils.models) gaussian_sigma (TomoFindCenterConfig attribute) (TomoReconstructConfig attribute) genkey() (in module CHAP.TaskManager) get() (UidSet method) get_args() (PipelineItem method) get_available_scan_numbers() (in module CHAP.common.models.map) get_axes() (in module CHAP.edd.processor) get_azimuthal_adjustments() (in module CHAP.common.models.integration) (IntegrationConfig method) get_azimuthal_integrators() (in module CHAP.common.models.integration) (IntegrationConfig method) get_azimuthally_integrated_data() (IntegrationConfig method) get_cake_integrated_data() (IntegrationConfig method) get_calibration_mask_ranges() (MCADetectorStrainAnalysis method) get_config() (PipelineItem method) (RawDetectorDataMapProcessor method) get_consecutive_int_range() (in module CHAP.utils.general) get_coords() (MapConfig method) get_data() (PipelineItem static method) get_default_nxentry() (PipelineItem static method) get_detector_data() (in module CHAP.common.models.map) (MapConfig method) (SpecScans method) get_detector_log_timestamps() (in module CHAP.common.models.map) get_ds_unique() (Material method) get_expression_value() (in module CHAP.common.models.map) get_id() (Detector method) get_index() (SetupNXdataProcessor method) (SpecScans method)

get_integrated_data() (IntegrationConfig method) get_integrated_data_coordinates() (in module CHAP.common.models.integration) get_map() (ParFile method) get_mask_array() (in module CHAP.common.models.integration) get_mask_ranges() (MCADetectorCalibration method) get_multi_geometry_integrator() (in module CHAP.common.models.integration) (IntegrationConfig method) get_nxroot() (RawDetectorDataMapProcessor method) get_peak_locations() (in module CHAP.edd.utils) get_radially_integrated_data() (IntegrationConfig method) get_rolling_sum_spectra() (in module CHAP.edd.utils) get_scan_step_index() (MapConfig method) get_scanparser() (in module CHAP.common.models.map) (SpecScans method) get_schema() (PipelineItem method) get_smb_par_attr() (MapConfig static method) get_smb_par_value() (in module CHAP.common.models.map) get_spec_counter_value() (in module CHAP.common.models.map) get_spec_motor_value() (in module CHAP.common.models.map) get_spectra_fits() (in module CHAP.edd.utils) get_trailing_int() (in module CHAP.utils.general) get_tth_map() (MCADetectorStrainAnalysis method) get_unique_hkls_ds() (in module CHAP.edd.utils) get_value() (MapConfig method) (PointByPointScanData method) get_values() (ParFile method) getfloat_attr() (in module CHAP.utils.general) gformat() (in module CHAP.utils.general) GiwaxsConversionConfig (class in CHAP.giwaxs.models) GiwaxsConversionProcessor (class in CHAP.giwaxs.processor) good_scan_numbers() (ParFile method) guess_init_peak() (Fit static method)

H

h5path (H5Reader attribute) H5Reader (class in CHAP.common.reader) H5Writer (class in CHAP.common.writer)

has_filename() (PipelineItem method) hkl_indices (MCADetectorCalibration property) hkls_unique() (Material method) HttpRequest() (in module CHAP.foxden.utils)

I

id_ (Detector attribute) idx (H5Reader attribute) illegal_combination() (in module CHAP.utils.general) illegal_value() (in module CHAP.utils.general) ImageProcessor (class in CHAP.common.processor) ImageProcessorConfig (class in CHAP.common.models.common) ImageWriter (class in CHAP.common.writer) img_row_bounds (TomoReduceConfig attribute) import_scanparser() (in module CHAP.common.models.map) independent_dimensions (MapConfig attribute) IndependentDimension (class in CHAP.common.models.map) index_nearest() (in module CHAP.utils.general) index_nearest_down() (in module CHAP.utils.general) index_nearest_up() (in module CHAP.utils.general) index_range (ImageProcessorConfig attribute) index_route() (in module CHAP.server) init_nxdata() (SetupNXdataProcessor method) init_parameters (Fit property) init_value (FitParameter property) init_values (Fit property) input_int() (in module CHAP.utils.general) input_int_list() (in module CHAP.utils.general) input_menu() (in module CHAP.utils.general) input_num() (in module CHAP.utils.general) input_num_list() (in module CHAP.utils.general) input_yesno() (in module CHAP.utils.general)

inputdir (RunConfig attribute) integrate() (PyfaiIntegratorConfig method) Integrate1dConfig (class in CHAP.giwaxs.models) Integrate2dConfig (class in CHAP.giwaxs.models) integrated_data_coordinates (IntegrationConfig property) integrated_data_dims (IntegrationConfig property) integrated_data_shape (IntegrationConfig property) integration_method (PyfaiIntegratorConfig attribute) integration_params (PyfaiIntegratorConfig attribute) integration_type (IntegrationConfig attribute) IntegrationConfig (class in CHAP.common.models.integration) integrations (PyfaiIntegrationConfig attribute) interactive (RunConfig attribute) is_alive() (TaskManager method) is_dict_nums() (in module CHAP.utils.general) is_dict_series() (in module CHAP.utils.general) is_dict_strings() (in module CHAP.utils.general) is_index() (in module CHAP.utils.general) is_index_range() (in module CHAP.utils.general) is_int() (in module CHAP.utils.general) is_int_pair() (in module CHAP.utils.general) is_int_series() (in module CHAP.utils.general) is_num() (in module CHAP.utils.general) is_num_pair() (in module CHAP.utils.general) is_num_series() (in module CHAP.utils.general) is_str_or_str_series() (in module CHAP.utils.general) is_str_series() (in module CHAP.utils.general)

J

joinall() (TaskManager method)

L

label (CorrectionsData attribute) (DwellTimeActual attribute) (PointByPointScanData attribute) (PostsampleIntensity attribute) (PresampleIntensity attribute) lam (BaselineConfig attribute) lattice_parameters (MaterialConfig attribute) lattice_parameters() (Material method) LatticeParameterRefinementProcessor (class in CHAP.edd.processor) lens_magnification (Detector attribute)

limit (FoxdenRequestConfig attribute) Linear (class in CHAP.utils.models) linear() (in module CHAP.utils.models) LinkamReader (class in CHAP.common.reader) list_dictionary_update() (in module CHAP.utils.general) list_to_string() (in module CHAP.utils.general) log_level (RunConfig attribute) logger (Pipeline attribute) (PipelineItem attribute) Lorentzian (class in CHAP.utils.models) lorentzian() (in module CHAP.utils.models)

M

main() (in module CHAP.processor) (in module CHAP.reader) (in module CHAP.runner) (in module CHAP.writer) make_material() (in module CHAP.edd.utils) (Material static method) map_values() (ParFile method) MapConfig (class in CHAP.common.models.map) MapProcessor (class in CHAP.common.processor) mask_array (Detector property) mask_file (AzimuthalIntegratorConfig attribute) (Detector attribute) mask_ranges (FitConfig attribute) Material (class in CHAP.utils.material) material_name (MaterialConfig attribute) MaterialConfig (class in CHAP.edd.models) MaterialParamSelector (class in CHAP.edd.select_material_params_gui) materials (MCACalibrationConfig attribute) MatplotlibAnimationWriter (class in CHAP.common.writer) MatplotlibFigureWriter (class in CHAP.common.writer) max (FitParameter attribute) max_energy_kev (DiffractionVolumeLengthConfig attribute) (MCAEnergyCalibrationConfig attribute) max_iter (BaselineConfig attribute) max_nfev (FitMap property) max_peak_index (MCAEnergyCalibrationConfig attribute) mca_mask() (MCADetectorCalibration method) MCACalibrationConfig (class in CHAP.edd.models) MCADetectorCalibration (class in CHAP.edd.models) MCADetectorConfig (class in CHAP.edd.models) MCADetectorDiffractionVolumeLength (class in CHAP.edd.models) MCADetectorStrainAnalysis (class in CHAP.edd.models) MCAEnergyCalibrationConfig (class in CHAP.edd.models) MCAEnergyCalibrationProcessor (class in CHAP.edd.processor) MCATthCalibrationConfig (class in CHAP.edd.models) MCATthCalibrationProcessor (class in CHAP.edd.processor) measurement_mode (DiffractionVolumeLengthConfig attribute) memfolder (FitConfig attribute) method (BinarizeProcessorConfig attribute) (FitConfig attribute) (Integrate1dConfig attribute) (Integrate2dConfig attribute) (PipelineItem property) method_type (PipelineItem property) min (FitParameter attribute) mmcs (Pipeline attribute) model (Constant attribute) (Exponential attribute) (Expression attribute) (Gaussian attribute) (Linear attribute) (Lorentzian attribute) (Multipeak attribute) (Quadratic attribute) (Rectangle attribute) model_config (AsyncProcessor attribute) (AzimuthalIntegratorConfig attribute) (BaseEddProcessor attribute) (BaselineConfig attribute) (BaseStrainProcessor attribute) (BinarizeProcessor attribute) (BinarizeProcessorConfig attribute) (BinaryFileReader attribute) (CHAPBaseModel attribute) (ConfigReader attribute) (Constant attribute) (ConstructBaseline attribute) (ConvertStructuredProcessor attribute) (CorrectionsData attribute) (Detector attribute), [1], [2] (DetectorConfig attribute) (DiffractionVolumeLengthConfig attribute) (DiffractionVolumeLengthProcessor attribute) (DwellTimeActual attribute) (EddMapReader attribute) (EddMPIMapReader attribute) (Exponential attribute) (Expression attribute) (ExtractArchiveWriter attribute) (FabioImageReader attribute) (FileTreeWriter attribute) (FitConfig attribute), [1] (FitParameter attribute) (FitProcessor attribute) (FoxdenDataDiscoveryReader attribute) (FoxdenDoiWriter attribute) (FoxdenMetadataReader attribute) (FoxdenMetadataWriter attribute) (FoxdenProvenanceProcessor attribute) (FoxdenProvenanceReader attribute) (FoxdenProvenanceWriter attribute) (FoxdenRequestConfig attribute) (FoxdenSpecScansReader attribute) (Gaussian attribute) (GiwaxsConversionConfig attribute) (GiwaxsConversionProcessor attribute) (H5Reader attribute) (H5Writer attribute) (ImageProcessor attribute) (ImageProcessorConfig attribute) (ImageWriter attribute) (IndependentDimension attribute) (Integrate1dConfig attribute) (Integrate2dConfig attribute) (IntegrationConfig attribute) (LatticeParameterRefinementProcessor attribute) (Linear attribute) (LinkamReader attribute) (Lorentzian attribute) (MapConfig attribute) (MapProcessor attribute) (MaterialConfig attribute) (MatplotlibAnimationWriter attribute) (MatplotlibFigureWriter attribute) (MCACalibrationConfig attribute) (MCADetectorCalibration attribute) (MCADetectorConfig attribute) (MCADetectorDiffractionVolumeLength attribute) (MCADetectorStrainAnalysis attribute) (MCAEnergyCalibrationConfig attribute) (MCAEnergyCalibrationProcessor attribute) (MCATthCalibrationConfig attribute) (MCATthCalibrationProcessor attribute) (MPICollectProcessor attribute) (MPIMapProcessor attribute) (MPISpawnMapProcessor attribute) (MultiGeometryConfig attribute) (Multipeak attribute) (NexusReader attribute) (NexusToNumpyProcessor attribute) (NexusToXarrayProcessor attribute) (NexusWriter attribute) (NormalizeMapProcessor attribute) (NormalizeNexusProcessor attribute) (NXdataReader attribute) (NXdataSliceReader attribute) (NXdataToDataPointsProcessor attribute) (NXfieldReader attribute) (Pipeline attribute) (PipelineItem attribute) (PointByPointScanData attribute) (PostsampleIntensity attribute) (PresampleIntensity attribute) (PrintProcessor attribute) (Processor attribute) (PyfaiAzimuthalIntegrationProcessor attribute) (PyfaiIntegrationConfig attribute) (PyfaiIntegrationProcessor attribute) (PyfaiIntegratorConfig attribute) (PyfaiResultsWriter attribute) (Quadratic attribute) (RawDetectorDataMapProcessor attribute) (Reader attribute) (Rectangle attribute) (RunConfig attribute) (Sample attribute) (ScanToMapReader attribute) (SetupNXdataProcessor attribute) (SetupNXdataReader attribute) (SliceNXdataReader attribute) (SpecConfig attribute) (SpecReader attribute) (SpecScans attribute) (StrainAnalysisConfig attribute) (StrainAnalysisProcessor attribute) (StrainAnalysisUpdateWriter attribute) (Tomo attribute) (TomoBrightFieldProcessor attribute) (TomoCHESSMapConverter attribute) (TomoCombineConfig attribute) (TomoDarkFieldProcessor attribute) (TomoDataProcessor attribute) (TomoFindCenterConfig attribute) (TomoMetadataProcessor attribute) (TomoReconstructConfig attribute) (TomoReduceConfig attribute) (TomoSimConfig attribute) (TomoSimFieldProcessor attribute) (TomoSpecProcessor attribute) (TomoWriter attribute) (TXTWriter attribute) (UnstructuredToStructuredProcessor attribute) (UpdateNXdataProcessor attribute) (UpdateNXdataReader attribute) (UpdateNXvalueProcessor attribute) (URLReader attribute) (Writer attribute) (XarrayToNexusProcessor attribute) (XarrayToNumpyProcessor attribute) (YAMLReader attribute) (YAMLWriter attribute)

model_dump() (CHAPBaseModel method) model_dump_json() (CHAPBaseModel method) model_post_init() (AsyncProcessor method) (AzimuthalIntegratorConfig method) (BaseEddProcessor method) (BaseStrainProcessor method) (BinarizeProcessor method) (BinaryFileReader method) (ConfigReader method) (ConstructBaseline method) (ConvertStructuredProcessor method) (DiffractionVolumeLengthConfig method) (DiffractionVolumeLengthProcessor method) (EddMapReader method) (EddMPIMapReader method) (ExtractArchiveWriter method) (FabioImageReader method) (FileTreeWriter method) (FitParameter method) (FitProcessor method) (FoxdenDataDiscoveryReader method) (FoxdenDoiWriter method) (FoxdenMetadataReader method) (FoxdenMetadataWriter method) (FoxdenProvenanceProcessor method) (FoxdenProvenanceReader method) (FoxdenProvenanceWriter method) (FoxdenSpecScansReader method) (GiwaxsConversionProcessor method) (H5Reader method) (H5Writer method) (ImageProcessor method) (ImageWriter method) (LatticeParameterRefinementProcessor method) (LinkamReader method) (MapConfig method) (MapProcessor method) (MaterialConfig method) (MatplotlibAnimationWriter method) (MatplotlibFigureWriter method) (MCADetectorCalibration method) (MCADetectorConfig method) (MCADetectorDiffractionVolumeLength method) (MCADetectorStrainAnalysis method) (MCAEnergyCalibrationProcessor method) (MCATthCalibrationProcessor method) (MPICollectProcessor method) (MPIMapProcessor method) (MPISpawnMapProcessor method) (NexusReader method) (NexusToNumpyProcessor method) (NexusToXarrayProcessor method) (NexusWriter method) (NormalizeMapProcessor method) (NormalizeNexusProcessor method) (NXdataReader method) (NXdataSliceReader method) (NXdataToDataPointsProcessor method) (NXfieldReader method) (Pipeline method) (PipelineItem method) (PrintProcessor method) (Processor method) (PyfaiAzimuthalIntegrationProcessor method) (PyfaiIntegrationProcessor method) (PyfaiResultsWriter method) (RawDetectorDataMapProcessor method) (Reader method) (RunConfig method) (ScanToMapReader method) (SetupNXdataProcessor method) (SetupNXdataReader method) (SliceNXdataReader method) (SpecReader method) (StrainAnalysisProcessor method) (StrainAnalysisUpdateWriter method) (Tomo method) (TomoBrightFieldProcessor method) (TomoCHESSMapConverter method) (TomoDarkFieldProcessor method) (TomoDataProcessor method) (TomoMetadataProcessor method) (TomoSimFieldProcessor method) (TomoSpecProcessor method) (TomoWriter method) (TXTWriter method) (UnstructuredToStructuredProcessor method) (UpdateNXdataProcessor method) (UpdateNXdataReader method) (UpdateNXvalueProcessor method) (URLReader method) (Writer method) (XarrayToNexusProcessor method) (XarrayToNumpyProcessor method) (YAMLReader method) (YAMLWriter method) ModelResult (class in CHAP.utils.fit) models (FitConfig attribute) module CHAP CHAP.common CHAP.common.models CHAP.common.models.common CHAP.common.models.integration CHAP.common.models.map CHAP.common.processor CHAP.common.reader CHAP.common.utils CHAP.common.writer CHAP.edd CHAP.edd.models CHAP.edd.processor CHAP.edd.reader CHAP.edd.select_material_params_gui CHAP.edd.utils CHAP.edd.writer CHAP.foxden CHAP.foxden.models CHAP.foxden.processor CHAP.foxden.reader CHAP.foxden.utils CHAP.foxden.writer CHAP.giwaxs CHAP.giwaxs.models CHAP.giwaxs.processor CHAP.giwaxs.reader CHAP.giwaxs.writer CHAP.models CHAP.pipeline CHAP.processor CHAP.reader CHAP.runner CHAP.saxswaxs CHAP.saxswaxs.processor CHAP.saxswaxs.reader CHAP.saxswaxs.writer CHAP.server CHAP.TaskManager CHAP.tomo CHAP.tomo.models CHAP.tomo.processor CHAP.tomo.reader CHAP.tomo.writer CHAP.utils CHAP.utils.converters CHAP.utils.fit CHAP.utils.general CHAP.utils.material CHAP.utils.models CHAP.utils.parfile CHAP.writer MPICollectProcessor (class in CHAP.common.processor) MPIMapProcessor (class in CHAP.common.processor) MPISpawnMapProcessor (class in CHAP.common.processor) mu (TomoSimConfig attribute) multi_geometry (PyfaiIntegratorConfig attribute) MultiGeometryConfig (class in CHAP.giwaxs.models) Multipeak (class in CHAP.utils.models)

N

name (FitParameter attribute) (PipelineItem attribute) (PointByPointScanData attribute) (PyfaiIntegratorConfig attribute) (Sample attribute) ndigits (PointByPointScanData attribute) NexusReader (class in CHAP.common.reader) NexusToNumpyProcessor (class in CHAP.common.processor) NexusToXarrayProcessor (class in CHAP.common.processor) NexusWriter (class in CHAP.common.writer) normalization_offset (Fit property) NormalizeMapProcessor (class in CHAP.common.processor) NormalizeNexusProcessor (class in CHAP.common.processor) not_zero() (in module CHAP.utils.general) npt (Integrate1dConfig attribute) npt_azim (Integrate2dConfig attribute) npt_rad (Integrate2dConfig attribute) num_bin (BinarizeProcessorConfig attribute)

num_bins (MCADetectorCalibration attribute) num_func_eval (Fit property) (FitMap property) num_image (TomoBrightFieldProcessor attribute) (TomoDarkFieldProcessor attribute) num_proc (FitConfig attribute) (MapProcessor attribute) (StrainAnalysisConfig attribute) nworkers() (TaskManager method) nxcopy() (in module CHAP.utils.general) NXdataReader (class in CHAP.common.reader) NXdataSliceReader (class in CHAP.edd.reader) NXdataToDataPointsProcessor (class in CHAP.common.processor) NXfieldReader (class in CHAP.common.reader) nxmemory (NexusReader attribute) nxpath (BinarizeProcessorConfig attribute) (NexusReader attribute) (NexusWriter attribute) (NXdataSliceReader attribute)

O

on_close() (MaterialParamSelector method) on_material_select() (MaterialParamSelector method) OptionParser (class in CHAP.processor) (class in CHAP.reader) (class in CHAP.writer)

osinfo() (in module CHAP.common.utils) out_of_bounds (FitMap property) outputdir (RunConfig attribute) oversampling (StrainAnalysisConfig attribute)

P

par_file (SpecScans attribute) Parameters (class in CHAP.utils.fit) parameters (Constant attribute) (Exponential attribute) (Expression attribute) (Fit property) (FitConfig attribute) (Gaussian attribute) (Linear attribute) (Lorentzian attribute) (Quadratic attribute) (Rectangle attribute) params (AzimuthalIntegratorConfig attribute) ParFile (class in CHAP.utils.parfile) parse_file() (LinkamReader class method) parser() (in module CHAP.runner) peak_energies (MCACalibrationConfig attribute) peak_models (MCADetectorStrainAnalysis attribute) (Multipeak attribute) Pipeline (class in CHAP.pipeline) pipeline_fields (DiffractionVolumeLengthProcessor attribute) (LatticeParameterRefinementProcessor attribute) (MapProcessor attribute) (MCAEnergyCalibrationProcessor attribute) (MCATthCalibrationProcessor attribute) (StrainAnalysisProcessor attribute) pipeline_route() (in module CHAP.server) PipelineData (class in CHAP.pipeline) PipelineItem (class in CHAP.pipeline) pixel_size (Detector attribute) plot (FitConfig attribute) plot() (Fit method) (FitMap method) plot_reference_data() (MaterialParamSelector method) PointByPointScanData (class in CHAP.common.models.map) poni_file (AzimuthalIntegratorConfig attribute) (Detector attribute) postsample_intensity (MapConfig attribute) PostsampleIntensity (class in CHAP.common.models.map) prefix (Constant attribute) (Detector attribute), [1] (Exponential attribute) (Expression attribute) (FitParameter property) (Gaussian attribute) (Linear attribute) (Lorentzian attribute) (Quadratic attribute) (Rectangle attribute) presample_intensity (MapConfig attribute) PresampleIntensity (class in CHAP.common.models.map) print_fit_report() (Fit method)

print_report (FitConfig attribute) PrintProcessor (class in CHAP.common.processor) process() (AsyncProcessor method) (BinarizeProcessor method) (ConstructBaseline method) (ConvertStructuredProcessor method) (DiffractionVolumeLengthProcessor method) (FitProcessor method) (FoxdenProvenanceProcessor method) (GiwaxsConversionProcessor method) (ImageProcessor method) (LatticeParameterRefinementProcessor method) (MapProcessor method) (MCAEnergyCalibrationProcessor method) (MCATthCalibrationProcessor method) (MPICollectProcessor method) (MPIMapProcessor method) (MPISpawnMapProcessor method) (NexusToNumpyProcessor method) (NexusToXarrayProcessor method) (NormalizeMapProcessor method) (NormalizeNexusProcessor method) (NXdataToDataPointsProcessor method) (PrintProcessor method) (Processor method) (PyfaiAzimuthalIntegrationProcessor method) (PyfaiIntegrationProcessor method) (RawDetectorDataMapProcessor method) (SetupNXdataProcessor method) (StrainAnalysisProcessor method) (TomoBrightFieldProcessor method) (TomoCHESSMapConverter method) (TomoDarkFieldProcessor method) (TomoDataProcessor method) (TomoMetadataProcessor method) (TomoSimFieldProcessor method) (TomoSpecProcessor method) (UnstructuredToStructuredProcessor method) (UpdateNXdataProcessor method) (UpdateNXvalueProcessor method) (XarrayToNexusProcessor method) (XarrayToNumpyProcessor method) Processor (class in CHAP.processor) processor_type (MCADetectorCalibration attribute) (MCADetectorConfig attribute) (MCADetectorDiffractionVolumeLength attribute) (MCADetectorStrainAnalysis attribute) profile (RunConfig property) PyfaiAzimuthalIntegrationProcessor (class in CHAP.common.processor) PyfaiIntegrationConfig (class in CHAP.giwaxs.models) PyfaiIntegrationProcessor (class in CHAP.giwaxs.processor) PyfaiIntegratorConfig (class in CHAP.giwaxs.models) PyfaiResultsWriter (class in CHAP.common.writer)

Q

Quadratic (class in CHAP.utils.models) quadratic() (in module CHAP.utils.models) quadratic_energy_calibration (MCATthCalibrationConfig attribute)

query (FoxdenRequestConfig attribute) quick_imshow() (in module CHAP.utils.general) quick_plot() (in module CHAP.utils.general) quit() (TaskManager method)

R

radial_max (IntegrationConfig attribute) radial_min (IntegrationConfig attribute) radial_npt (IntegrationConfig attribute) radial_range (MultiGeometryConfig attribute) radial_units (IntegrationConfig attribute) range_string_ge_gt_le_lt() (in module CHAP.utils.general) RawDetectorDataMapProcessor (class in CHAP.common.processor) read() (BinaryFileReader method) (ConfigReader method) (EddMapReader method) (EddMPIMapReader method) (FabioImageReader method) (FoxdenDataDiscoveryReader method) (FoxdenMetadataReader method) (FoxdenProvenanceReader method) (FoxdenSpecScansReader method) (H5Reader method) (LinkamReader method) (NexusReader method) (NXdataReader method) (NXdataSliceReader method) (NXfieldReader method) (Reader method) (ScanToMapReader method) (SetupNXdataReader method) (SliceNXdataReader method) (SpecReader method) (UpdateNXdataReader method) (URLReader method) (YAMLReader method) Reader (class in CHAP.reader) readFoxdenToken() (in module CHAP.foxden.utils) reconstruct_data (TomoDataProcessor attribute) reconstruct_data() (Tomo method)

Rectangle (class in CHAP.utils.models) rectangle() (in module CHAP.utils.models) redchi (Fit property) (FitMap property) reduce_data (TomoDataProcessor attribute) reduce_data() (Tomo method) rel_height_cutoff (FitConfig attribute) (MCADetectorStrainAnalysis attribute) (StrainAnalysisConfig attribute) remove (ImageWriter attribute) (Writer attribute) remove() (TaskManager method) remove_material() (MaterialParamSelector method) remove_original_data (BinarizeProcessorConfig attribute) remove_stripe_sigma (TomoReconstructConfig attribute) reserved_labels() (CorrectionsData class method) residual (Fit property) (FitMap property) right_handed (PyfaiIntegratorConfig attribute) ring_width (TomoFindCenterConfig attribute) (TomoReconstructConfig attribute) rolling_average() (in module CHAP.utils.general) root (RunConfig attribute) round_to_n() (in module CHAP.utils.general) round_up_to_n() (in module CHAP.utils.general) rows (Detector attribute) run() (in module CHAP.runner) (Worker method) run_config (PipelineItem property) run_material_selector() (in module CHAP.edd.select_material_params_gui) run_route() (in module CHAP.server) RunConfig (class in CHAP.models) runner() (in module CHAP.runner) running() (StoppableThread method)

S

Sample (class in CHAP.common.models.map) sample (MapConfig attribute) sample_size (TomoSimConfig attribute) sample_thickness (DiffractionVolumeLengthConfig attribute) sample_type (TomoSimConfig attribute) save_figures (DiffractionVolumeLengthProcessor attribute) (LatticeParameterRefinementProcessor attribute) (MCAEnergyCalibrationProcessor attribute) (MCATthCalibrationProcessor attribute) (StrainAnalysisProcessor attribute) (Tomo attribute) (TomoDataProcessor attribute) save_iobuf_fig() (in module CHAP.utils.general) save_raw_data (GiwaxsConversionConfig attribute) savefig_kw (MatplotlibFigureWriter attribute) scalar_data (MapConfig attribute) scan_number (NXdataSliceReader attribute) (ScanToMapReader attribute) (SliceNXdataReader attribute) (UpdateNXdataReader attribute) scan_numbers (EddMapReader attribute) (SpecScans attribute) (TomoSpecProcessor attribute) scan_step_indices (GiwaxsConversionConfig attribute) (MapConfig property) (MCACalibrationConfig attribute) scanparsers (SpecScans property) ScanToMapReader (class in CHAP.edd.reader) schema_ (PipelineItem attribute) secondary_iters (TomoReconstructConfig attribute) select_image_indices() (in module CHAP.utils.general) select_mask_1d() (in module CHAP.utils.general) select_mask_and_hkls() (in module CHAP.edd.utils) select_material_params() (in module CHAP.edd.select_material_params_gui) (in module CHAP.edd.utils) select_material_params_gui() (in module CHAP.edd.utils) select_roi_1d() (in module CHAP.utils.general) select_roi_2d() (in module CHAP.utils.general) select_tth_initial_guess() (in module CHAP.edd.utils) sequence_index (IntegrationConfig attribute) set() (FitParameter method) set_args() (PipelineItem method)

set_energy_calibration_mask_ranges() (MCADetectorCalibration method) set_logger() (in module CHAP.runner) set_thread_name() (in module CHAP.TaskManager) SetNumexprThreads (class in CHAP.tomo.processor) setup (StrainAnalysisProcessor attribute) SetupNXdataProcessor (class in CHAP.common.processor) SetupNXdataReader (class in CHAP.edd.reader) sgnum (MaterialConfig attribute) shape (MapConfig property) sigma_to_dvl_factor (DiffractionVolumeLengthConfig attribute) skip_animation (StrainAnalysisConfig attribute) SliceNXdataReader (class in CHAP.edd.reader) slit_size (TomoSimConfig attribute) spawn (RunConfig property) spawn() (TaskManager method) spec_file (NXdataSliceReader attribute) (SpecScans attribute) spec_scans (MapConfig attribute) (SpecConfig attribute) SpecConfig (class in CHAP.common.models.map) SpecReader (class in CHAP.common.reader) SpecScans (class in CHAP.common.models.map) start (IndependentDimension attribute) start_new_thread() (in module CHAP.TaskManager) station (MapConfig attribute) (SpecConfig attribute) (TomoSimConfig attribute) status (PipelineItem property) status() (TaskManager method) stderr (FitParameter property) step (IndependentDimension attribute) stop() (StoppableThread method) StoppableThread (class in CHAP.TaskManager) stopped() (StoppableThread method) StrainAnalysisConfig (class in CHAP.edd.models) StrainAnalysisProcessor (class in CHAP.edd.processor) StrainAnalysisUpdateWriter (class in CHAP.edd.writer) string_to_list() (in module CHAP.utils.general) success (Fit property) (FitMap property) sum_axes (PyfaiIntegrationConfig attribute) (StrainAnalysisConfig attribute)

T

task() (in module CHAP.server) TaskManager (class in CHAP.TaskManager) test_ge_gt_le_lt() (in module CHAP.utils.general) theta_step (TomoSimConfig attribute) title (IntegrationConfig attribute) (MapConfig attribute) tol (BaselineConfig attribute) Tomo (class in CHAP.tomo.processor) TomoBrightFieldProcessor (class in CHAP.tomo.processor) TomoCHESSMapConverter (class in CHAP.tomo.processor) TomoCombineConfig (class in CHAP.tomo.models) TomoDarkFieldProcessor (class in CHAP.tomo.processor) TomoDataProcessor (class in CHAP.tomo.processor) TomoFindCenterConfig (class in CHAP.tomo.models)

TomoMetadataProcessor (class in CHAP.tomo.processor) TomoReconstructConfig (class in CHAP.tomo.models) TomoReduceConfig (class in CHAP.tomo.models) TomoSimConfig (class in CHAP.tomo.models) TomoSimFieldProcessor (class in CHAP.tomo.processor) TomoSpecProcessor (class in CHAP.tomo.processor) TomoWriter (class in CHAP.tomo.writer) tool_type (IntegrationConfig attribute) trunc_to_n() (in module CHAP.utils.general) tth_calibrated (MCADetectorCalibration attribute) tth_initial_guess (MCADetectorCalibration attribute) (MCATthCalibrationConfig attribute) tth_max (MCADetectorCalibration attribute) tth_tol (MCADetectorCalibration attribute) TXTWriter (class in CHAP.common.writer)

U

UidSet (class in CHAP.TaskManager) unit (MultiGeometryConfig attribute) units (DwellTimeActual attribute) (PointByPointScanData attribute) (PostsampleIntensity attribute) (PresampleIntensity attribute) UnstructuredToStructuredProcessor (class in CHAP.common.processor) unwrap_pipelinedata() (PipelineItem static method) unwrap_tuple() (in module CHAP.utils.general)

update (StrainAnalysisProcessor attribute) update_detectors() (MCADetectorConfig method) update_material() (MaterialParamSelector method) update_nxdata() (SetupNXdataProcessor method) update_plot() (MaterialParamSelector method) UpdateNXdataProcessor (class in CHAP.common.processor) UpdateNXdataReader (class in CHAP.edd.reader) UpdateNXvalueProcessor (class in CHAP.common.processor) url (FoxdenRequestConfig attribute) URLReader (class in CHAP.common.reader)

V

validate_ais() (MultiGeometryConfig class method) validate_attrs() (Detector class method) (MapConfig class method) validate_azimuthal_units() (IntegrationConfig class method) validate_azimuthalintegratorconfig_after() (AzimuthalIntegratorConfig method) validate_azimuthalintegratorconfig_before() (AzimuthalIntegratorConfig class method) validate_background() (FitConfig class method) validate_baseline() (FitConfig class method) validate_data_point() (SetupNXdataProcessor method) validate_data_source_for_map_config() (in module CHAP.common.models.map) validate_detector_ids() (EddMPIMapReader class method) validate_detectors() (SetupNXdataReader class method) validate_diffractionvolumelengthconfig_after() (DiffractionVolumeLengthConfig method) validate_diffractionvolumeLengthprocessor_after() (DiffractionVolumeLengthProcessor method) validate_diffractionvolumeLengthprocessor_before() (DiffractionVolumeLengthProcessor class method) validate_energy_mask_ranges() (FitConfig class method) validate_experiment_type() (MapConfig class method) (SpecConfig class method) validate_for_map_config() (IntegrationConfig method) validate_for_scalar_data() (PointByPointScanData method) validate_for_spec_scans() (PointByPointScanData method) validate_for_station() (PointByPointScanData method) validate_id() (Detector class method) validate_index_range() (ImageProcessorConfig class method) validate_label() (PointByPointScanData class method) validate_latticeparameterrefinementprocessor_before() (LatticeParameterRefinementProcessor class method) validate_log_level() (RunConfig class method) validate_mapconfig_before() (MapConfig class method) validate_mask_file() (Detector class method) validate_mask_ranges() (FitConfig class method) validate_materialconfig_after() (MaterialConfig method) validate_max() (FitParameter class method) validate_max_peak_index() (MCAEnergyCalibrationConfig class method) validate_mcacalibrationconfig_before() (MCACalibrationConfig class method) validate_mcadetectorconfig_after() (MCADetectorConfig method) validate_mcadetectorconfig_before() (MCADetectorConfig class method) validate_mcaenergycalibrationconfig_after() (MCAEnergyCalibrationConfig method)

validate_mcaenergycalibrationconfig_before() (MCAEnergyCalibrationConfig class method) validate_mcaenergycalibrationprocessor_before() (MCAEnergyCalibrationProcessor class method) validate_mcatthcalibrationprocessor_before() (MCATthCalibrationProcessor class method) validate_method() (FitConfig class method) validate_min() (FitParameter class method) validate_model() (in module CHAP.common.reader) (in module CHAP.common.writer) validate_num_proc() (MapProcessor class method) validate_oversampling() (StrainAnalysisConfig class method) validate_par_file() (SpecScans class method) validate_parameters() (in module CHAP.utils.models) validate_pipeline_after() (Pipeline method) validate_pipelineitem_after() (PipelineItem method) validate_poni_file() (Detector class method) validate_processor_before() (Processor class method) validate_pyfaiintegrationconfig_before() (PyfaiIntegrationConfig class method) validate_pyfaiintegratorconfig_after() (PyfaiIntegratorConfig method) validate_pyfaiintegratorconfig_before() (PyfaiIntegratorConfig class method) validate_radial_units() (IntegrationConfig class method) validate_reader_model() (in module CHAP.reader) validate_runconfig_before() (RunConfig class method) validate_scan_numbers() (EddMapReader class method) (SpecScans class method) (TomoSpecProcessor class method) validate_scan_step_indices() (GiwaxsConversionConfig class method) (MCACalibrationConfig class method) validate_spec_file() (SpecScans class method) validate_specconfig_before() (SpecConfig class method) validate_specreader_after() (SpecReader method) validate_strainanalysisprocessor_before() (StrainAnalysisProcessor class method) validate_vrange() (ImageProcessorConfig class method) validate_writer_model() (in module CHAP.writer) value (FitParameter attribute) var_names (Fit property) (FitMap property) vary (FitParameter attribute) verbose (FoxdenRequestConfig attribute) vrange (ImageProcessorConfig attribute)

W

wall_thickness (TomoSimConfig attribute) wavelength (MultiGeometryConfig attribute) Worker (class in CHAP.TaskManager) write() (ExtractArchiveWriter method) (FileTreeWriter method) (FoxdenDoiWriter method) (FoxdenMetadataWriter method) (FoxdenProvenanceWriter method) (H5Writer method) (ImageWriter method) (MatplotlibAnimationWriter method) (MatplotlibFigureWriter method) (NexusWriter method) (PyfaiResultsWriter method) (StrainAnalysisUpdateWriter method) (TomoWriter method) (TXTWriter method) (Writer method) (YAMLWriter method)

write_filetree() (in module CHAP.common.writer) write_matplotlibfigure() (in module CHAP.common.writer) write_nexus() (in module CHAP.common.writer) write_npz() (PyfaiResultsWriter method) write_nxs() (PyfaiResultsWriter method) write_tif() (in module CHAP.common.writer) write_txt() (in module CHAP.common.writer) write_yaml() (in module CHAP.common.writer) Writer (class in CHAP.writer)

X

x (Fit property) x_bounds (TomoCombineConfig attribute) (TomoReconstructConfig attribute)

XarrayToNexusProcessor (class in CHAP.common.processor) XarrayToNumpyProcessor (class in CHAP.common.processor)

Y

y (Fit property) (FitMap property) y_bounds (TomoCombineConfig attribute) (TomoReconstructConfig attribute)

YAMLReader (class in CHAP.common.reader) YAMLWriter (class in CHAP.common.writer) ymap (FitMap property)

Z

z_bounds (TomoCombineConfig attribute) (TomoReconstructConfig attribute)