Index

A

abs_height_cutoff (FitConfig attribute) (MCADetectorStrainAnalysis attribute) (StrainAnalysisConfig attribute) add() (Parameters method) (UidSet method) add_calibration() (MCADetectorStrainAnalysis method) add_data_point() (SetupNXdataProcessor method) add_material() (Material method) (MaterialParamSelector method) add_model() (Fit method) add_parameter() (Fit method) add_points() (StrainAnalysisProcessor static method) ai (AzimuthalIntegratorConfig property) (IntegratorConfig property) ais (Integrate2dGIConfig attribute) (MultiGeometryConfig attribute), [1] all_any() (in module CHAP.utils.general) all_scalar_data (MapConfig property) almost_equal() (in module CHAP.utils.general)

analyze_spectra() (PyMcaProcessor method) analyze_spectrum() (PyMcaProcessor method) animation (ImageProcessorConfig attribute) args (Pipeline attribute) assert_no_duplicate_attr_in_list_of_objs() (in module CHAP.utils.general) assert_no_duplicate_key_in_list_of_dicts() (in module CHAP.utils.general) assert_no_duplicates_in_list_of_dicts() (in module CHAP.utils.general) AsyncProcessor (class in CHAP.common.processor) attrs (BaselineConfig attribute) (Detector attribute) (Integrate1dConfig attribute) (Integrate2dConfig attribute) (Integrate2dGIConfig attribute) (MapConfig attribute) axis (ImageProcessorConfig attribute) azimuth_range (MultiGeometryConfig attribute), [1] azimuthal_integrators (GiwaxsConversionConfig attribute) (PyfaiIntegrationConfig attribute), [1] AzimuthalIntegratorConfig (class in CHAP.common.models.integration) (class in CHAP.giwaxs.models)

B

background (FitConfig attribute) background_intensity (TomoSimConfig attribute) backgroundpeaks (FitConfig attribute) baseline (FitConfig attribute) baseline_arPLS() (in module CHAP.utils.general) baseline_type (FitConfig attribute) BaselineConfig (class in CHAP.edd.models) basename (ImageProcessorConfig attribute) batch_runner() (in module CHAP.runner) beam_intensity (TomoSimConfig attribute) best_errors (Fit property) (FitMap property)

best_fit (Fit property) (FitMap property) best_parameters (Fit property) best_parameters() (FitMap method) best_values (Fit property) (FitMap property) best_vary (Fit property) (FitMap property) BinarizeConfig (class in CHAP.common.models.common) BinarizeProcessor (class in CHAP.common.processor) BinaryFileReader (class in CHAP.common.reader)

C

calc_rosette_strains (StrainAnalysisConfig attribute) calibration_method (MCATthCalibrationConfig attribute) center_config (TomoReconstructProcessor attribute) center_offset_max (TomoFindCenterConfig attribute) center_offset_min (TomoFindCenterConfig attribute) center_offsets (TomoFindCenterConfig attribute) (TomoFindCenterGui property) center_rows (TomoFindCenterConfig attribute) (TomoFindCenterGui attribute) center_search_range (TomoFindCenterConfig attribute) center_stack_index (TomoFindCenterConfig attribute) (TomoFindCenterGui attribute) centers (MultipeakModel attribute) centers_range (FitConfig attribute) (MCADetectorStrainAnalysis attribute) (MultipeakModel attribute) centers_range_fraction (FitConfig attribute) (MCADetectorStrainAnalysis attribute) (MultipeakModel attribute) CHAP module CHAP.common module CHAP.common.models module CHAP.common.models.common module CHAP.common.models.integration module CHAP.common.models.map module CHAP.common.nexus_utils module CHAP.common.processor module CHAP.common.reader module CHAP.common.utils module CHAP.edd module CHAP.edd.models module CHAP.edd.processor module CHAP.edd.reader module CHAP.edd.select_material_params_gui module CHAP.edd.utils module CHAP.edd.writer module CHAP.foxden module CHAP.foxden.models module CHAP.foxden.processor module CHAP.foxden.reader module CHAP.foxden.utils module CHAP.foxden.writer module CHAP.giwaxs module CHAP.giwaxs.models module CHAP.giwaxs.processor module CHAP.giwaxs.reader module CHAP.giwaxs.writer module CHAP.models module CHAP.pipeline module CHAP.processor module CHAP.reader module CHAP.runner module CHAP.saxswaxs module CHAP.saxswaxs.reader module CHAP.saxswaxs.server module CHAP.saxswaxs.server.logging_config module CHAP.saxswaxs.server.saxswaxs_to_chap module

CHAP.saxswaxs.utils module CHAP.saxswaxs.writer module CHAP.server module CHAP.taskmanager module CHAP.tomo module CHAP.tomo.models module CHAP.tomo.processor module CHAP.tomo.reader module CHAP.tomo.writer module CHAP.utils module CHAP.utils.converters module CHAP.utils.fit module CHAP.utils.general module CHAP.utils.material module CHAP.utils.models module CHAP.utils.parfile module CHAP.writer module CHAP.xrf module CHAP.xrf.processor module CHAP.xrf.reader module CHAPBaseModel (class in CHAP.models) CHAPSlice (class in CHAP.common.models.map) chi_disc (MultiGeometryConfig attribute), [1] chisqr (Fit property) (FitMap property) clear() (TaskManager method) code (FitConfig attribute) columns (LinkamReader attribute) Component (class in CHAP.utils.fit) Components (class in CHAP.utils.fit) components (Components property) (Fit property) (FitMap property) config (DiffractionVolumeLengthProcessor attribute) (FitProcessor attribute) (FoxdenDataDiscoveryReader attribute) (FoxdenMetadataReader attribute) (FoxdenProvenanceReader attribute) (GiwaxsConversionProcessor attribute) (HKLProcessor attribute) (ImageProcessor attribute) (LatticeParameterRefinementProcessor attribute) (MapProcessor attribute) (MCAEnergyCalibrationProcessor attribute) (MCATthCalibrationProcessor attribute) (PyfaiIntegrationProcessor attribute) (SetupProcessor attribute) (SpecReader attribute) (StrainAnalysisProcessor attribute) (TomoCombineProcessor attribute) (TomoFindCenterProcessor attribute) (TomoMetadataProcessor attribute) (TomoReconstructProcessor attribute) (TomoReduceProcessor attribute) (TomoSimFieldProcessor attribute) ConfigReader (class in CHAP.common.reader) constant() (in module CHAP.utils.models) ConstantModel (class in CHAP.utils.models) construct_baseline() (ConstructBaseline static method) ConstructBaseline (class in CHAP.common.processor) convert_configs() (in module CHAP.saxswaxs.server.saxswaxs_to_chap) convert_sparse_dense() (in module CHAP.utils.converters) convert_structured_unstructured() (in module CHAP.utils.converters) convert_xarray_nexus() (in module CHAP.utils.converters) ConvertStructuredProcessor (class in CHAP.common.processor) coord_range (ImageProcessorConfig attribute) coords (MapConfig property) CorrectionsData (class in CHAP.common.models.map) covar (Fit property) (FitMap property) create_copy (NexusReader attribute) create_http_request_payload() (FoxdenRequestConfig method) create_metadata_provenance() (in module CHAP.tomo.processor) create_multipeak_model() (FitProcessor static method)

D

daemon() (in module CHAP.server) data_type (CorrectionsData attribute) (PointByPointScanData attribute) dataset_chunks (SetupProcessor attribute) dataset_id (EddMapReader attribute) (EddMPIMapReader attribute) (SetupNXdataReader attribute) dataset_shape (SetupProcessor attribute) default (FitParameter property) delta_theta (TomoReduceConfig attribute) depth_list() (in module CHAP.utils.general) depth_tuple() (in module CHAP.utils.general) description (FitParameter attribute) (Sample attribute) Detector (class in CHAP.common.models.map) detector_config (DiffractionVolumeLengthProcessor attribute) (HKLProcessor attribute) (LatticeParameterRefinementProcessor attribute) (MapProcessor attribute) (MCAEnergyCalibrationProcessor attribute) (MCATthCalibrationProcessor attribute) (SpecReader attribute) (StrainAnalysisProcessor attribute) (TomoSimFieldProcessor attribute)

detector_ids (EddMPIMapReader attribute) (UpdateNXdataReader attribute) DetectorConfig (class in CHAP.common.models.map) DetectorDataReader (class in CHAP.common.reader) detectors (DetectorConfig attribute) (MCADetectorConfig attribute) (SetupNXdataReader attribute) dict() (CHAPBaseModel method) dict_to_zarr() (in module CHAP.saxswaxs.utils) dictionary_update() (in module CHAP.utils.general) did (FoxdenRequestConfig attribute) (MapConfig attribute) DiffractionVolumeLengthConfig (class in CHAP.edd.models) DiffractionVolumeLengthProcessor (class in CHAP.edd.processor) dims (MapConfig property) discard() (UidSet method) dmin (MaterialConfig attribute) ds_unique() (Material method) dvl (MCADetectorDiffractionVolumeLength attribute) dwell_time_actual (MapConfig attribute) DwellTimeActual (class in CHAP.common.models.map)

E

EddMapReader (class in CHAP.edd.reader) EddMPIMapReader (class in CHAP.edd.reader) empty (MultiGeometryConfig attribute), [1] encoding (StreamToLogFile property) end (CHAPSlice attribute) (IndependentDimension attribute) energies (MCADetectorCalibration property) energy_calibration_coeffs (MCADetectorCalibration attribute) energy_calibration_mask_ranges (MCADetectorCalibration property) energy_mask_ranges (FitConfig attribute) environments() (in module CHAP.common.utils) error_model (Integrate1dConfig attribute) (Integrate2dConfig attribute) eval() (Fit method) (FitModel method)

eval_components() (ModelResult method) execute() (Pipeline method) (PipelineItem method) executed_pipeline (PipelineItem attribute) experiment_type (MapConfig attribute) (SpecConfig attribute) exponential() (in module CHAP.utils.models) ExponentialModel (class in CHAP.utils.models) expr (ExpressionModel attribute) (FitParameter attribute) expr_parameters (ExpressionModel property) ExpressionModel (class in CHAP.utils.models) ExpressionProcessor (class in CHAP.common.processor)

F

FabioImageReader (class in CHAP.common.reader) FiberIntegratorConfig (class in CHAP.giwaxs.models) fig_to_iobuf() (in module CHAP.utils.general) file_exists_and_readable() (in module CHAP.utils.general) file_type (ProvenanceFileProcessor attribute) fileformat (ImageProcessorConfig attribute) filename (Reader attribute) (SpecReader attribute) (TomoSpecProcessor attribute) (Writer attribute) fill_scan_numbers() (SliceNXdataReader class method) find_peak_cutoff (StrainAnalysisConfig attribute) Fit (class in CHAP.utils.fit) fit() (Fit method) (FitMap method) fit_amplitude (MCADetectorDiffractionVolumeLength attribute) fit_center (MCADetectorDiffractionVolumeLength attribute) fit_report() (ModelResult method) fit_sigma (MCADetectorDiffractionVolumeLength attribute) fit_type (MultipeakModel attribute) FitConfig (class in CHAP.edd.models) (class in CHAP.utils.models) FitMap (class in CHAP.utils.fit) FitModel (class in CHAP.utils.models)

FitParameter (class in CHAP.utils.models) FitProcessor (class in CHAP.utils.fit) flush() (StreamToLogFile method) force_exit() (Worker method) force_overwrite (Writer attribute) form (RectangleModel attribute) FoxdenDataDiscoveryReader (class in CHAP.foxden.reader) FoxdenDoiWriter (class in CHAP.foxden.writer) FoxdenMetadataReader (class in CHAP.foxden.reader) FoxdenMetadataWriter (class in CHAP.foxden.writer) FoxdenProvenanceReader (class in CHAP.foxden.reader) FoxdenProvenanceWriter (class in CHAP.foxden.writer) FoxdenRequestConfig (class in CHAP.foxden.models) FoxdenSpecScansReader (class in CHAP.foxden.reader) frame (FabioImageReader attribute) freemem() (FitMap method) func (FitModel property) func_args (FitModel property) fwhm_max (FitConfig attribute) (MCADetectorStrainAnalysis attribute) (MultipeakModel attribute) fwhm_min (FitConfig attribute) (MCADetectorStrainAnalysis attribute) (MultipeakModel attribute)

G

gaussian() (in module CHAP.utils.models) gaussian_sigma (TomoFindCenterConfig attribute) (TomoFindCenterGui attribute) (TomoReconstructConfig attribute) GaussianModel (class in CHAP.utils.models) genkey() (in module CHAP.taskmanager) get() (UidSet method) get_args() (PipelineItem method) get_available_scan_numbers() (in module CHAP.common.models.map) get_axes_indices() (PyfaiIntegratorConfig method) get_common_axes() (UnstructuredToStructuredProcessor method) get_config() (PipelineItem method) (RawDetectorDataMapProcessor method) get_consecutive_int_range() (in module CHAP.utils.general) get_coords() (MapConfig method) get_current_git_hash() (in module CHAP.runner) get_data() (PipelineItem static method) get_default_nxentry() (PipelineItem static method) get_default_path() (in module CHAP.utils.general) get_detector_data() (in module CHAP.common.models.map) (MapConfig method) (SpecScans method) get_detector_log_timestamps() (in module CHAP.common.models.map) get_ds_unique() (Material method) get_energy_mask_ranges() (MCADetectorCalibration method) get_expression_value() (in module CHAP.common.models.map) get_id() (Detector method) get_index() (SetupNXdataProcessor method) (SpecScans method) get_logger() (in module CHAP.saxswaxs.server.logging_config)

get_map() (ParFile method) get_mask_ranges() (MCADetectorCalibration method) get_nxroot() (PipelineItem static method) (RawDetectorDataMapProcessor method) get_peak_locations() (in module CHAP.edd.utils) get_pipelinedata_item() (PipelineItem static method) get_placeholder_data() (PyfaiIntegratorConfig method) get_rolling_sum_spectra() (in module CHAP.edd.utils) get_scan_start_time() (in module CHAP.common.models.map) get_scan_step_index() (MapConfig method) get_scanparser() (in module CHAP.common.models.map) (SpecScans method) get_schema() (PipelineItem method) get_smb_par_attr() (MapConfig static method) get_smb_par_value() (in module CHAP.common.models.map) get_spec_counter_value() (in module CHAP.common.models.map) get_spec_motor_value() (in module CHAP.common.models.map) get_spectra_fits() (in module CHAP.edd.utils) get_task_logger() (in module CHAP.saxswaxs.server.logging_config) get_trailing_int() (in module CHAP.utils.general) get_tth_map() (MCADetectorStrainAnalysis method) get_unique_hkls_ds() (in module CHAP.edd.utils) get_value() (MapConfig method) (PointByPointScanData method) get_values() (ParFile method) getfloat_attr() (in module CHAP.utils.general) gformat() (in module CHAP.utils.general) GiwaxsConversionConfig (class in CHAP.giwaxs.models) GiwaxsConversionProcessor (class in CHAP.giwaxs.processor) good_scan_numbers() (ParFile method) guess_init_peak() (Fit static method)

H

h5path (H5Reader attribute) H5Reader (class in CHAP.common.reader) has_filename() (PipelineItem method)

hkl_indices (MCADetectorCalibration property) HKLProcessor (class in CHAP.edd.processor) hkls_unique() (Material method) HTTP_request() (in module CHAP.foxden.utils)

I

id_ (Detector attribute) idx (FoxdenRequestConfig attribute) (H5Reader attribute) (NexusReader attribute) ignore_aliases() (VerboseSafeDumper method) illegal_combination() (in module CHAP.utils.general) illegal_value() (in module CHAP.utils.general) ImageProcessor (class in CHAP.common.processor) ImageProcessorConfig (class in CHAP.common.models.common) img_column_bounds (TomoFindCenterGui attribute) img_row_bounds (TomoFindCenterGui attribute) (TomoReduceConfig attribute) import_scanparser() (in module CHAP.common.models.map) incl_listed_detectors_only (MCADetectorConfig attribute) independent_dimensions (MapConfig attribute) IndependentDimension (class in CHAP.common.models.map) index_nearest() (in module CHAP.utils.general) index_nearest_down() (in module CHAP.utils.general) index_nearest_up() (in module CHAP.utils.general) index_range (ImageProcessorConfig attribute) index_route() (in module CHAP.server) IndexSliceConfig (class in CHAP.common.models.common) init_nxdata() (SetupNXdataProcessor method) init_parameters (Fit property) init_parameters() (FitMap method) init_placeholder_results() (PyfaiIntegratorConfig method) init_pymca() (PyMcaProcessor method) init_value (FitParameter property) init_values (Fit property) (FitMap property) input_int() (in module CHAP.utils.general) input_int_list() (in module CHAP.utils.general) input_menu() (in module CHAP.utils.general)

input_name (PyfaiIntegratorConfig attribute) input_num() (in module CHAP.utils.general) input_num_list() (in module CHAP.utils.general) input_yesno() (in module CHAP.utils.general) inputdir (RunConfig attribute) integrate() (PyfaiIntegratorConfig method), [1] Integrate1dConfig (class in CHAP.common.models.integration) (class in CHAP.giwaxs.models) Integrate2dConfig (class in CHAP.common.models.integration) (class in CHAP.giwaxs.models) Integrate2dGIConfig (class in CHAP.giwaxs.models) IntegrateRadialConfig (class in CHAP.common.models.integration) integration_method (PyfaiIntegratorConfig attribute), [1] integration_params (PyfaiIntegratorConfig attribute), [1] integrations (GiwaxsConversionConfig attribute) (PyfaiIntegrationConfig attribute), [1] IntegratorConfig (class in CHAP.giwaxs.models) interactive (RunConfig attribute) is_alive() (TaskManager method) is_dict_nums() (in module CHAP.utils.general) is_dict_series() (in module CHAP.utils.general) is_dict_strings() (in module CHAP.utils.general) is_index() (in module CHAP.utils.general) is_index_range() (in module CHAP.utils.general) is_int() (in module CHAP.utils.general) is_int_pair() (in module CHAP.utils.general) is_int_series() (in module CHAP.utils.general) is_num() (in module CHAP.utils.general) is_num_pair() (in module CHAP.utils.general) is_num_series() (in module CHAP.utils.general) is_str_or_str_series() (in module CHAP.utils.general) is_str_series() (in module CHAP.utils.general) isatty() (StreamToLogFile method)

J

joinall() (TaskManager method)

json_results (StrainAnalysisProcessor attribute)

K

kwargs (NumpyStackProcessor attribute) (NumpySumProcessor attribute) (NumpyToNXfieldProcessor attribute)

L

label (CorrectionsData attribute) (DwellTimeActual attribute) (PointByPointScanData attribute) (PostsampleIntensity attribute) (PresampleIntensity attribute) lam (BaselineConfig attribute) lattice_parameters (MaterialConfig attribute) lattice_parameters() (Material method) LatticeParameterRefinementProcessor (class in CHAP.edd.processor) limit (FoxdenRequestConfig attribute) linear() (in module CHAP.utils.models) LINEAR_PARAMETERS (ConstantModel attribute) (ExponentialModel attribute) (FitModel attribute) (GaussianModel attribute) (LinearModel attribute) (LorentzianModel attribute) (PseudoVoigtModel attribute) (QuadraticModel attribute) (RectangleModel attribute)

LinearModel (class in CHAP.utils.models) LinkamReader (class in CHAP.common.reader) list_dictionary_update() (in module CHAP.utils.general) list_to_string() (in module CHAP.utils.general) lmfit_model() (ExpressionModel method) LMFITMODEL (ConstantModel attribute) (ExponentialModel attribute) (GaussianModel attribute) (LinearModel attribute) (LorentzianModel attribute) (PseudoVoigtModel attribute) (QuadraticModel attribute) (RectangleModel attribute) log_level (RunConfig attribute) logger (Pipeline attribute) (PipelineItem attribute) long_name (FitModel property) lorentzian() (in module CHAP.utils.models) LorentzianModel (class in CHAP.utils.models) lower_cutoff (HKLProcessor attribute) (ReducedDataProcessor attribute)

M

main() (in module CHAP.processor) (in module CHAP.reader) (in module CHAP.runner) (in module CHAP.writer) make_material() (Material static method) make_pipeline() (in module CHAP.saxswaxs.server.saxswaxs_to_chap) map_values() (ParFile method) MapConfig (class in CHAP.common.models.map) MapProcessor (class in CHAP.common.processor) MapReader (class in CHAP.common.reader) mask (MCADetectorCalibration property) mask_data (AzimuthalIntegratorConfig property) mask_file (AzimuthalIntegratorConfig attribute) (IntegratorConfig attribute) mask_ranges (FitConfig attribute) Material (class in CHAP.utils.material) material_name (MaterialConfig attribute) MaterialConfig (class in CHAP.edd.models) MaterialParamSelector (class in CHAP.edd.select_material_params_gui) materials (MCACalibrationConfig attribute) max (FitParameter attribute) max_energy_kev (DiffractionVolumeLengthConfig attribute) (MCAEnergyCalibrationConfig attribute) max_iter (BaselineConfig attribute) max_nfev (FitConfig attribute) (FitMap property) (StrainAnalysisConfig attribute) max_peak_index (MCAEnergyCalibrationConfig attribute) MCACalibrationConfig (class in CHAP.edd.models) MCADetectorCalibration (class in CHAP.edd.models) MCADetectorConfig (class in CHAP.edd.models) MCADetectorDiffractionVolumeLength (class in CHAP.edd.models) MCADetectorStrainAnalysis (class in CHAP.edd.models) MCAEnergyCalibrationConfig (class in CHAP.edd.models) MCAEnergyCalibrationProcessor (class in CHAP.edd.processor) MCATthCalibrationConfig (class in CHAP.edd.models) MCATthCalibrationProcessor (class in CHAP.edd.processor) measurement_mode (DiffractionVolumeLengthConfig attribute) memfolder (FitConfig attribute) method (BinarizeConfig attribute) (FitConfig attribute) (Integrate1dConfig attribute), [1] (Integrate2dConfig attribute), [1] (Integrate2dGIConfig attribute) (IntegrateRadialConfig attribute) (PipelineItem property) method_type (PipelineItem property) min (FitParameter attribute) mmcs (Pipeline attribute) mode (NexusReader attribute) model_config (AsyncProcessor attribute) (AzimuthalIntegratorConfig attribute), [1] (BaselineConfig attribute) (BinarizeConfig attribute) (BinarizeProcessor attribute) (BinaryFileReader attribute) (CHAPBaseModel attribute) (CHAPSlice attribute) (ConfigReader attribute) (ConstantModel attribute) (ConstructBaseline attribute) (ConvertStructuredProcessor attribute) (CorrectionsData attribute) (Detector attribute) (DetectorConfig attribute) (DetectorDataReader attribute) (DiffractionVolumeLengthConfig attribute) (DiffractionVolumeLengthProcessor attribute) (DwellTimeActual attribute) (EddMapReader attribute) (EddMPIMapReader attribute) (ExponentialModel attribute) (ExpressionModel attribute) (ExpressionProcessor attribute) (FabioImageReader attribute) (FiberIntegratorConfig attribute) (FitConfig attribute), [1] (FitModel attribute) (FitParameter attribute) (FitProcessor attribute) (FoxdenDataDiscoveryReader attribute) (FoxdenDoiWriter attribute) (FoxdenMetadataReader attribute) (FoxdenMetadataWriter attribute) (FoxdenProvenanceReader attribute) (FoxdenProvenanceWriter attribute) (FoxdenRequestConfig attribute) (FoxdenSpecScansReader attribute) (GaussianModel attribute) (GiwaxsConversionConfig attribute) (GiwaxsConversionProcessor attribute) (H5Reader attribute) (HKLProcessor attribute) (ImageProcessor attribute) (ImageProcessorConfig attribute) (IndependentDimension attribute) (IndexSliceConfig attribute) (Integrate1dConfig attribute), [1] (Integrate2dConfig attribute), [1] (Integrate2dGIConfig attribute) (IntegrateRadialConfig attribute) (IntegratorConfig attribute) (LatticeParameterRefinementProcessor attribute) (LinearModel attribute) (LinkamReader attribute) (LorentzianModel attribute) (MapConfig attribute) (MapProcessor attribute) (MapReader attribute) (MaterialConfig attribute) (MCACalibrationConfig attribute) (MCADetectorCalibration attribute) (MCADetectorConfig attribute) (MCADetectorDiffractionVolumeLength attribute) (MCADetectorStrainAnalysis attribute) (MCAEnergyCalibrationConfig attribute) (MCAEnergyCalibrationProcessor attribute) (MCATthCalibrationConfig attribute) (MCATthCalibrationProcessor attribute) (MPICollectProcessor attribute) (MPIMapProcessor attribute) (MPISpawnMapProcessor attribute) (MultiGeometryConfig attribute), [1] (MultipeakModel attribute) (NexusMakeLinkProcessor attribute) (NexusReader attribute) (NexusToNumpyProcessor attribute) (NexusToXarrayProcessor attribute) (NexusToZarrProcessor attribute) (NormalizeMapProcessor attribute) (NormalizeNexusProcessor attribute) (NumpyStackProcessor attribute) (NumpySumProcessor attribute) (NumpyToNXfieldProcessor attribute) (NXdataReader attribute) (NXdataSliceReader attribute) (NXdataToDataPointsProcessor attribute) (NXfieldReader attribute) (NXfluoProcessor attribute) (PandasReader attribute) (PandasToXarrayProcessor attribute) (Pipeline attribute) (PipelineItem attribute) (PointByPointScanData attribute) (PostsampleIntensity attribute) (PresampleIntensity attribute) (PrintProcessor attribute) (Processor attribute) (ProvenanceFileProcessor attribute) (PseudoVoigtModel attribute) (PyfaiAzimuthalIntegrationProcessor attribute) (PyfaiIntegrationConfig attribute), [1] (PyfaiIntegrationProcessor attribute) (PyfaiIntegratorConfig attribute), [1] (PyMcaFitConfigReader attribute) (PyMcaProcessor attribute) (PyMcaResultsProcessor attribute) (QuadraticModel attribute) (RawDetectorDataMapProcessor attribute) (Reader attribute) (RectangleModel attribute) (ReducedDataProcessor attribute) (RunConfig attribute) (Sample attribute) (ScanToMapReader attribute) (SetupNXdataProcessor attribute) (SetupNXdataReader attribute) (SetupProcessor attribute) (SliceNXdataReader attribute) (SpecConfig attribute) (SpecReader attribute) (SpecScans attribute) (StrainAnalysisConfig attribute) (StrainAnalysisProcessor attribute) (StrainAnalysisUpdateWriter attribute) (TomoBrightFieldProcessor attribute) (TomoCHESSMapConverter attribute) (TomoCombineConfig attribute) (TomoCombineProcessor attribute) (TomoDarkFieldProcessor attribute) (TomoFindCenterConfig attribute) (TomoFindCenterGui attribute) (TomoFindCenterProcessor attribute) (TomoMetadataProcessor attribute) (TomoReconstructConfig attribute) (TomoReconstructProcessor attribute) (TomoReduceConfig attribute) (TomoReduceProcessor attribute) (TomoSimConfig attribute) (TomoSimFieldProcessor attribute) (TomoSpecProcessor attribute) (TomoWriter attribute) (UnstructuredToStructuredConfig attribute) (UnstructuredToStructuredProcessor attribute) (UpdateNXdataProcessor attribute) (UpdateNXdataReader attribute) (UpdateNXvalueProcessor attribute) (UpdateValuesProcessor attribute) (URLReader attribute) (Writer attribute) (XarrayToNexusProcessor attribute) (XarrayToNumpyProcessor attribute) (YAMLReader attribute) (ZarrReader attribute) (ZarrToNexusProcessor attribute)

model_dump() (CHAPBaseModel method) model_dump_json() (CHAPBaseModel method) MODEL_IDENTIFIERS (FitModel attribute) (RectangleModel attribute) MODEL_PARAMETERS (FitModel attribute) (PseudoVoigtModel attribute) model_post_init() (AsyncProcessor method) (AzimuthalIntegratorConfig method), [1] (BinarizeProcessor method) (BinaryFileReader method) (ConfigReader method) (ConstantModel method) (ConstructBaseline method) (ConvertStructuredProcessor method) (DetectorDataReader method) (DiffractionVolumeLengthConfig method) (DiffractionVolumeLengthProcessor method) (EddMapReader method) (EddMPIMapReader method) (ExponentialModel method) (ExpressionModel method) (ExpressionProcessor method) (FabioImageReader method) (FiberIntegratorConfig method) (FitModel method) (FitParameter method) (FitProcessor method) (FoxdenDataDiscoveryReader method) (FoxdenDoiWriter method) (FoxdenMetadataReader method) (FoxdenMetadataWriter method) (FoxdenProvenanceReader method) (FoxdenProvenanceWriter method) (FoxdenSpecScansReader method) (GaussianModel method) (GiwaxsConversionProcessor method) (H5Reader method) (HKLProcessor method) (ImageProcessor method) (LatticeParameterRefinementProcessor method) (LinearModel method) (LinkamReader method) (LorentzianModel method) (MapConfig method) (MapProcessor method) (MapReader method) (MaterialConfig method) (MCADetectorCalibration method) (MCADetectorConfig method) (MCADetectorDiffractionVolumeLength method) (MCADetectorStrainAnalysis method) (MCAEnergyCalibrationProcessor method) (MCATthCalibrationProcessor method) (MPICollectProcessor method) (MPIMapProcessor method) (MPISpawnMapProcessor method) (NexusMakeLinkProcessor method) (NexusReader method) (NexusToNumpyProcessor method) (NexusToXarrayProcessor method) (NexusToZarrProcessor method) (NormalizeMapProcessor method) (NormalizeNexusProcessor method) (NumpyStackProcessor method) (NumpySumProcessor method) (NumpyToNXfieldProcessor method) (NXdataReader method) (NXdataSliceReader method) (NXdataToDataPointsProcessor method) (NXfieldReader method) (NXfluoProcessor method) (PandasReader method) (PandasToXarrayProcessor method) (Pipeline method) (PipelineItem method) (PrintProcessor method) (Processor method) (ProvenanceFileProcessor method) (PseudoVoigtModel method) (PyfaiAzimuthalIntegrationProcessor method) (PyfaiIntegrationProcessor method) (PyfaiIntegratorConfig method) (PyMcaFitConfigReader method) (PyMcaProcessor method) (PyMcaResultsProcessor method) (QuadraticModel method) (RawDetectorDataMapProcessor method) (Reader method) (RectangleModel method) (ReducedDataProcessor method) (RunConfig method) (ScanToMapReader method) (SetupNXdataProcessor method) (SetupNXdataReader method) (SetupProcessor method) (SliceNXdataReader method) (SpecReader method) (StrainAnalysisProcessor method) (StrainAnalysisUpdateWriter method) (TomoBrightFieldProcessor method) (TomoCHESSMapConverter method) (TomoCombineProcessor method) (TomoDarkFieldProcessor method) (TomoFindCenterGui method) (TomoFindCenterProcessor method) (TomoMetadataProcessor method) (TomoReconstructProcessor method) (TomoReduceProcessor method) (TomoSimFieldProcessor method) (TomoSpecProcessor method) (TomoWriter method) (UnstructuredToStructuredProcessor method) (UpdateNXdataProcessor method) (UpdateNXdataReader method) (UpdateNXvalueProcessor method) (UpdateValuesProcessor method) (URLReader method) (Writer method) (XarrayToNexusProcessor method) (XarrayToNumpyProcessor method) (YAMLReader method) (ZarrReader method) (ZarrToNexusProcessor method) model_type (ConstantModel attribute) (ExponentialModel attribute) (ExpressionModel attribute) (FitModel attribute) (GaussianModel attribute) (LinearModel attribute) (LorentzianModel attribute) (MultipeakModel attribute) (PseudoVoigtModel attribute) (QuadraticModel attribute) (RectangleModel attribute) ModelResult (class in CHAP.utils.fit) models (FitConfig attribute) module CHAP CHAP.common CHAP.common.models CHAP.common.models.common CHAP.common.models.integration CHAP.common.models.map CHAP.common.nexus_utils CHAP.common.processor CHAP.common.reader CHAP.common.utils CHAP.edd CHAP.edd.models CHAP.edd.processor CHAP.edd.reader CHAP.edd.select_material_params_gui CHAP.edd.utils CHAP.edd.writer CHAP.foxden CHAP.foxden.models CHAP.foxden.processor CHAP.foxden.reader CHAP.foxden.utils CHAP.foxden.writer CHAP.giwaxs CHAP.giwaxs.models CHAP.giwaxs.processor CHAP.giwaxs.reader CHAP.giwaxs.writer CHAP.models CHAP.pipeline CHAP.processor CHAP.reader CHAP.runner CHAP.saxswaxs CHAP.saxswaxs.reader CHAP.saxswaxs.server CHAP.saxswaxs.server.logging_config CHAP.saxswaxs.server.saxswaxs_to_chap CHAP.saxswaxs.utils CHAP.saxswaxs.writer CHAP.server CHAP.taskmanager CHAP.tomo CHAP.tomo.models CHAP.tomo.processor CHAP.tomo.reader CHAP.tomo.writer CHAP.utils CHAP.utils.converters CHAP.utils.fit CHAP.utils.general CHAP.utils.material CHAP.utils.models CHAP.utils.parfile CHAP.writer CHAP.xrf CHAP.xrf.processor CHAP.xrf.reader MPICollectProcessor (class in CHAP.common.processor) MPIMapProcessor (class in CHAP.common.processor) MPISpawnMapProcessor (class in CHAP.common.processor) mu (TomoSimConfig attribute) multi_geometry (PyfaiIntegratorConfig attribute), [1] MultiGeometryConfig (class in CHAP.common.models.integration) (class in CHAP.giwaxs.models) MultipeakModel (class in CHAP.utils.models)

N

name (FitParameter attribute) (PipelineItem attribute) (PointByPointScanData attribute) (PyfaiIntegratorConfig attribute), [1] (Sample attribute) ndigits (PointByPointScanData attribute) NexusMakeLinkProcessor (class in CHAP.common.nexus_utils) NexusReader (class in CHAP.common.reader) NexusToNumpyProcessor (class in CHAP.common.processor) NexusToXarrayProcessor (class in CHAP.common.processor) NexusToZarrProcessor (class in CHAP.common.processor) normalization_offset (Fit property) NormalizeMapProcessor (class in CHAP.common.processor) NormalizeNexusProcessor (class in CHAP.common.processor) not_zero() (in module CHAP.utils.general) npt (Integrate1dConfig attribute), [1] (IntegrateRadialConfig attribute) npt_azim (Integrate2dConfig attribute), [1] npt_ip (Integrate2dGIConfig attribute) npt_oop (Integrate2dGIConfig attribute) npt_rad (Integrate2dConfig attribute), [1] num_bin (BinarizeConfig attribute) num_bins (MCADetectorCalibration attribute) num_center_rows (TomoFindCenterGui attribute) NUM_CORE_TOMOPY_LIMIT (in module CHAP.tomo.processor) num_func_eval (Fit property) (FitMap property) num_image (TomoBrightFieldProcessor attribute) (TomoDarkFieldProcessor attribute) num_proc (FitConfig attribute) (StrainAnalysisConfig attribute) (TomoCombineProcessor attribute) (TomoFindCenterGui attribute) (TomoFindCenterProcessor attribute) (TomoReconstructProcessor attribute) (TomoReduceProcessor attribute)

NumpyStackProcessor (class in CHAP.common.processor) NumpySumProcessor (class in CHAP.common.processor) NumpyToNXfieldProcessor (class in CHAP.common.processor) nworkers() (TaskManager method) nxcopy() (in module CHAP.utils.general) NXdataReader (class in CHAP.common.reader) NXdataSliceReader (class in CHAP.edd.reader) NXdataToDataPointsProcessor (class in CHAP.common.processor) NXfieldReader (class in CHAP.common.reader) NXfluoProcessor (class in CHAP.xrf.processor) nxmemory (BinarizeProcessor attribute) (GiwaxsConversionProcessor attribute) (ImageProcessor attribute) (NexusReader attribute) (ProvenanceFileProcessor attribute) (PyfaiIntegrationProcessor attribute) (TomoCHESSMapConverter attribute) (TomoCombineProcessor attribute) (TomoFindCenterProcessor attribute) (TomoReconstructProcessor attribute) (TomoReduceProcessor attribute) nxpath (BinarizeConfig attribute) (GiwaxsConversionProcessor attribute) (NexusReader attribute) (NXdataSliceReader attribute) (PyfaiIntegrationProcessor attribute) (UnstructuredToStructuredConfig attribute)

O

on_close() (MaterialParamSelector method) on_material_select() (MaterialParamSelector method) OptionParser (class in CHAP.processor)

osinfo() (in module CHAP.common.utils) out_of_bounds (FitMap property) outputdir (RunConfig attribute)

P

PandasReader (class in CHAP.common.reader) PandasToXarrayProcessor (class in CHAP.common.processor) par_file (SpecScans attribute) parabolic() (in module CHAP.utils.models) Parameters (class in CHAP.utils.fit) parameters (Fit property) (FitConfig attribute) (FitModel attribute) params (AzimuthalIntegratorConfig attribute) (IntegratorConfig attribute) ParFile (class in CHAP.utils.parfile) parse_file() (LinkamReader class method) parser() (in module CHAP.runner) peak_energies (MCACalibrationConfig attribute) peak_models (MCADetectorStrainAnalysis attribute) (MultipeakModel attribute) Pipeline (class in CHAP.pipeline) pipeline_fields (DiffractionVolumeLengthProcessor attribute) (FitProcessor attribute) (FoxdenDataDiscoveryReader attribute) (FoxdenMetadataReader attribute) (FoxdenProvenanceReader attribute) (GiwaxsConversionProcessor attribute) (HKLProcessor attribute) (ImageProcessor attribute) (LatticeParameterRefinementProcessor attribute) (MapProcessor attribute) (MCAEnergyCalibrationProcessor attribute) (MCATthCalibrationProcessor attribute) (PyfaiIntegrationProcessor attribute) (PyMcaProcessor attribute) (SetupProcessor attribute) (StrainAnalysisProcessor attribute) (TomoCombineProcessor attribute) (TomoFindCenterProcessor attribute) (TomoReconstructProcessor attribute) (TomoReduceProcessor attribute) (TomoSimFieldProcessor attribute) pipeline_route() (in module CHAP.server) PipelineData (class in CHAP.pipeline) PipelineItem (class in CHAP.pipeline) plot (FitConfig attribute) plot() (Fit method) (FitMap method) PointByPointScanData (class in CHAP.common.models.map) poni_file (AzimuthalIntegratorConfig attribute) (IntegratorConfig attribute) postsample_intensity (MapConfig attribute) PostsampleIntensity (class in CHAP.common.models.map) prefix (FitModel attribute) presample_intensity (MapConfig attribute) PresampleIntensity (class in CHAP.common.models.map) print_fit_report() (Fit method) print_report (FitConfig attribute) PrintProcessor (class in CHAP.common.processor) process() (AsyncProcessor method) (BinarizeProcessor method) (ConstructBaseline method) (ConvertStructuredProcessor method) (DiffractionVolumeLengthProcessor method) (ExpressionProcessor method) (FitProcessor method) (GiwaxsConversionProcessor method) (HKLProcessor method) (ImageProcessor method) (LatticeParameterRefinementProcessor method) (MapProcessor method) (MCAEnergyCalibrationProcessor method) (MCATthCalibrationProcessor method) (MPICollectProcessor method) (MPIMapProcessor method) (MPISpawnMapProcessor method) (NexusMakeLinkProcessor method) (NexusToNumpyProcessor method) (NexusToXarrayProcessor method) (NexusToZarrProcessor method) (NormalizeMapProcessor method) (NormalizeNexusProcessor method) (NumpyStackProcessor method) (NumpySumProcessor method) (NumpyToNXfieldProcessor method) (NXdataToDataPointsProcessor method) (NXfluoProcessor method) (PandasToXarrayProcessor method) (PrintProcessor method) (Processor method) (ProvenanceFileProcessor method) (PyfaiAzimuthalIntegrationProcessor method) (PyfaiIntegrationProcessor method) (PyMcaProcessor method) (PyMcaResultsProcessor method) (RawDetectorDataMapProcessor method) (ReducedDataProcessor method) (SetupNXdataProcessor method) (SetupProcessor method) (StrainAnalysisProcessor method) (TomoBrightFieldProcessor method) (TomoCHESSMapConverter method) (TomoCombineProcessor method) (TomoDarkFieldProcessor method) (TomoFindCenterProcessor method) (TomoMetadataProcessor method) (TomoReconstructProcessor method) (TomoReduceProcessor method) (TomoSimFieldProcessor method) (TomoSpecProcessor method) (UnstructuredToStructuredProcessor method) (UpdateNXdataProcessor method) (UpdateNXvalueProcessor method) (UpdateValuesProcessor method) (XarrayToNexusProcessor method) (XarrayToNumpyProcessor method) (ZarrToNexusProcessor method)

Processor (class in CHAP.processor) processor_type (MCADetectorCalibration attribute) (MCADetectorConfig attribute) (MCADetectorDiffractionVolumeLength attribute) (MCADetectorStrainAnalysis attribute) profile (RunConfig property) ProvenanceFileProcessor (class in CHAP.foxden.processor) PseudoVoigtModel (class in CHAP.utils.models) pvoigt() (in module CHAP.utils.models) PyfaiAzimuthalIntegrationProcessor (class in CHAP.common.processor) PyfaiIntegrationConfig (class in CHAP.common.models.integration) (class in CHAP.giwaxs.models) PyfaiIntegrationProcessor (class in CHAP.giwaxs.processor) PyfaiIntegratorConfig (class in CHAP.common.models.integration) (class in CHAP.giwaxs.models) pymca_config (PyMcaProcessor attribute) PyMcaFitConfigReader (class in CHAP.xrf.reader) PyMcaProcessor (class in CHAP.xrf.processor) PyMcaResultsProcessor (class in CHAP.xrf.processor)

Q

quadratic_energy_calibration (MCATthCalibrationConfig attribute) QuadraticModel (class in CHAP.utils.models) query (FoxdenRequestConfig attribute)

quick_imshow() (in module CHAP.utils.general) quick_plot() (in module CHAP.utils.general) quit() (TaskManager method)

R

radial_range (MultiGeometryConfig attribute), [1] radial_unit (IntegrateRadialConfig attribute) range_string_ge_gt_le_lt() (in module CHAP.utils.general) RawDetectorDataMapProcessor (class in CHAP.common.processor) read() (BinaryFileReader method) (ConfigReader method) (DetectorDataReader method) (EddMapReader method) (EddMPIMapReader method) (FabioImageReader method) (FoxdenDataDiscoveryReader method) (FoxdenMetadataReader method) (FoxdenProvenanceReader method) (FoxdenSpecScansReader method) (H5Reader method) (LinkamReader method) (MapReader method) (NexusReader method) (NXdataReader method) (NXdataSliceReader method) (NXfieldReader method) (PandasReader method) (PyMcaFitConfigReader method) (Reader method) (ScanToMapReader method) (SetupNXdataReader method) (SliceNXdataReader method) (SpecReader method) (UpdateNXdataReader method) (URLReader method) (YAMLReader method) (ZarrReader method) read_foxden_token() (in module CHAP.foxden.utils) read_metadata_provenance() (in module CHAP.tomo.processor) Reader (class in CHAP.reader) recon_planes (TomoFindCenterGui property) reconstruct_planes() (TomoFindCenterGui static method) rectangle() (in module CHAP.utils.models)

RectangleModel (class in CHAP.utils.models) redchi (Fit property) (FitMap property) ReducedDataProcessor (class in CHAP.edd.processor) rel_height_cutoff (FitConfig attribute) (MCADetectorStrainAnalysis attribute) (StrainAnalysisConfig attribute) remove (Writer attribute) remove() (TaskManager method) remove_constant_dims (MapProcessor attribute) remove_material() (MaterialParamSelector method) remove_original_data (BinarizeConfig attribute) remove_stripe (TomoReduceConfig attribute) remove_stripe_sigma (TomoReconstructConfig attribute) reserved_labels() (CorrectionsData class method) residual (Fit property) (FitMap property) result_coords (PyfaiIntegratorConfig property) result_shape (PyfaiIntegratorConfig property) right_handed (PyfaiIntegratorConfig attribute), [1] ring_width (TomoFindCenterConfig attribute) (TomoFindCenterGui attribute) (TomoReconstructConfig attribute) roi (DetectorConfig attribute) roitoslice() (DetectorConfig method) rolling_average() (in module CHAP.utils.general) root (RunConfig attribute) round_to_n() (in module CHAP.utils.general) round_up_to_n() (in module CHAP.utils.general) run() (in module CHAP.runner) (PipelineItem class method) (Worker method) run_config (PipelineItem property) run_material_selector() (in module CHAP.edd.select_material_params_gui) run_route() (in module CHAP.server) RunConfig (class in CHAP.models) runner() (in module CHAP.runner) running() (StoppableThread method)

S

Sample (class in CHAP.common.models.map) sample (MapConfig attribute) sample_orientation (Integrate2dGIConfig attribute) sample_size (TomoSimConfig attribute) sample_thickness (DiffractionVolumeLengthConfig attribute) sample_type (TomoSimConfig attribute) save_figures (GiwaxsConversionProcessor attribute) (ImageProcessor attribute) (TomoCombineProcessor attribute) (TomoFindCenterProcessor attribute) (TomoReconstructProcessor attribute) (TomoReduceProcessor attribute) save_iobuf_fig() (in module CHAP.utils.general) save_raw_data (GiwaxsConversionConfig attribute) saxswaxs_to_chap() (in module CHAP.saxswaxs.server.saxswaxs_to_chap) scalar_data (MapConfig attribute) scan_number (NXdataSliceReader attribute) (ScanToMapReader attribute) (SliceNXdataReader attribute) (UpdateNXdataReader attribute) scan_numbers (EddMapReader attribute) (SliceNXdataReader attribute) (SpecScans attribute) (TomoSpecProcessor attribute) scan_step_indices (GiwaxsConversionConfig attribute) (MapConfig property) (MCACalibrationConfig attribute) scanparsers (SpecScans property) ScanToMapReader (class in CHAP.edd.reader) schema_ (PipelineItem attribute) secondary_iters (TomoReconstructConfig attribute) select_image_indices() (in module CHAP.utils.general) select_mask_1d() (in module CHAP.utils.general) select_mask_and_hkls() (in module CHAP.edd.utils) select_material_params() (in module CHAP.edd.utils) select_material_params_gui() (in module CHAP.edd.select_material_params_gui) select_roi_1d() (in module CHAP.utils.general) select_roi_2d() (in module CHAP.utils.general) select_tth_initial_guess() (in module CHAP.edd.utils) set() (FitParameter method) set_args() (PipelineItem method) set_log_level() (RunConfig method) set_logdir() (in module CHAP.saxswaxs.server.logging_config) set_logger() (in module CHAP.runner) set_thread_name() (in module CHAP.taskmanager) SetNumexprThreads (class in CHAP.tomo.processor) setup (StrainAnalysisProcessor attribute) SetupNXdataProcessor (class in CHAP.common.processor) SetupNXdataReader (class in CHAP.edd.reader)

SetupProcessor (class in CHAP.utils.fit) sgnum (MaterialConfig attribute) shape (Detector attribute) (MapConfig property) sigma_to_dvl_factor (DiffractionVolumeLengthConfig attribute) signal_shape (SetupProcessor attribute) signals (UnstructuredToStructuredConfig attribute) skip_animation (GiwaxsConversionConfig attribute) (StrainAnalysisConfig attribute) SliceNXdataReader (class in CHAP.edd.reader) slit_size (TomoSimConfig attribute) spawn (RunConfig property) spawn() (TaskManager method) spec_file (NXdataSliceReader attribute) (SpecScans attribute) spec_scans (MapConfig attribute) (SpecConfig attribute) SpecConfig (class in CHAP.common.models.map) SpecReader (class in CHAP.common.reader) SpecScans (class in CHAP.common.models.map) stack_order (NumpyStackProcessor attribute) standalone (StrainAnalysisProcessor attribute) start (CHAPSlice attribute) (IndependentDimension attribute) (IndexSliceConfig attribute) start_new_thread() (in module CHAP.taskmanager) station (MapConfig attribute) (SpecConfig attribute) (TomoSimConfig attribute) status (PipelineItem property) status() (TaskManager method) stderr (FitParameter property) step (CHAPSlice attribute) (IndependentDimension attribute) (IndexSliceConfig attribute) stop (IndexSliceConfig attribute) stop() (StoppableThread method) StoppableThread (class in CHAP.taskmanager) stopped() (StoppableThread method) StrainAnalysisConfig (class in CHAP.edd.models) StrainAnalysisProcessor (class in CHAP.edd.processor) StrainAnalysisUpdateWriter (class in CHAP.edd.writer) StreamToLogFile (class in CHAP.saxswaxs.server.logging_config) string_to_list() (in module CHAP.utils.general) structure_signal_values() (UnstructuredToStructuredProcessor method) success (Fit property) (FitMap property) sum_axes (PyfaiIntegrationConfig attribute), [1] (StrainAnalysisConfig attribute)

T

task() (in module CHAP.server) task_log_context() (in module CHAP.saxswaxs.server.logging_config) TaskManager (class in CHAP.taskmanager) tbf (TomoFindCenterGui attribute) test_ge_gt_le_lt() (in module CHAP.utils.general) theta_step (TomoSimConfig attribute) thetas (TomoFindCenterGui attribute) title (MapConfig attribute) tk_root (TomoFindCenterGui attribute) tol (BaselineConfig attribute) tolist() (CHAPSlice method) (DetectorConfig method) tomo_stacks (TomoFindCenterGui attribute) TomoBrightFieldProcessor (class in CHAP.tomo.processor) TomoCHESSMapConverter (class in CHAP.tomo.processor) TomoCombineConfig (class in CHAP.tomo.models) TomoCombineProcessor (class in CHAP.tomo.processor) TomoDarkFieldProcessor (class in CHAP.tomo.processor) TomoFindCenterConfig (class in CHAP.tomo.models)

TomoFindCenterGui (class in CHAP.tomo.processor) TomoFindCenterProcessor (class in CHAP.tomo.processor) TomoMetadataProcessor (class in CHAP.tomo.processor) TomoReconstructConfig (class in CHAP.tomo.models) TomoReconstructProcessor (class in CHAP.tomo.processor) TomoReduceConfig (class in CHAP.tomo.models) TomoReduceProcessor (class in CHAP.tomo.processor) TomoSimConfig (class in CHAP.tomo.models) TomoSimFieldProcessor (class in CHAP.tomo.processor) TomoSpecProcessor (class in CHAP.tomo.processor) TomoWriter (class in CHAP.tomo.writer) toslice() (CHAPSlice method) trunc_to_n() (in module CHAP.utils.general) tth_calibrated (MCADetectorCalibration attribute) tth_initial_guess (MCADetectorCalibration attribute) (MCATthCalibrationConfig attribute) tth_map (MCADetectorStrainAnalysis attribute) tth_max (MCADetectorCalibration attribute) tth_tol (MCADetectorCalibration attribute)

U

UidSet (class in CHAP.taskmanager) unit (MultiGeometryConfig attribute), [1] unit_ip (Integrate2dGIConfig attribute) unit_oop (Integrate2dGIConfig attribute) units (DwellTimeActual attribute) (FitParameter attribute) (PointByPointScanData attribute) (PostsampleIntensity attribute) (PresampleIntensity attribute) unstructured_axes (UnstructuredToStructuredConfig attribute) UnstructuredToStructuredConfig (class in CHAP.common.models.common) UnstructuredToStructuredProcessor (class in CHAP.common.processor) unwrap_pipelinedata() (PipelineItem static method) unwrap_tuple() (in module CHAP.utils.general)

update (StrainAnalysisProcessor attribute) update_detectors() (MCADetectorConfig method) update_material() (MaterialParamSelector method) update_nxdata() (SetupNXdataProcessor method) UpdateNXdataProcessor (class in CHAP.common.processor) UpdateNXdataReader (class in CHAP.edd.reader) UpdateNXvalueProcessor (class in CHAP.common.processor) UpdateValuesProcessor (class in CHAP.utils.fit) upper_cutoff (HKLProcessor attribute) (ReducedDataProcessor attribute) url (FoxdenMetadataWriter attribute) (FoxdenProvenanceWriter attribute) (FoxdenRequestConfig attribute) URLReader (class in CHAP.common.reader)

V

validate_ai() (AzimuthalIntegratorConfig method) validate_ais() (MultiGeometryConfig class method), [1] validate_attrs() (MapConfig class method) validate_azimuthalintegratorconfig_after() (AzimuthalIntegratorConfig method) (FiberIntegratorConfig method) validate_background() (FitConfig class method) validate_baseline() (FitConfig class method) validate_before() (MapConfig class method) validate_config() (PyfaiIntegrationConfig class method) (PyfaiIntegratorConfig class method) validate_config_fields() (UnstructuredToStructuredProcessor method) validate_data() (UnstructuredToStructuredProcessor method) validate_data_point() (SetupNXdataProcessor method) validate_data_present (MapConfig attribute) validate_data_source_for_map_config() (in module CHAP.common.models.map) validate_detector_after() (Detector method) validate_detector_ids() (EddMPIMapReader class method) validate_detectors() (SetupNXdataReader class method) validate_diffractionvolumelengthconfig_after() (DiffractionVolumeLengthConfig method) validate_diffractionvolumelengthprocessor_after() (DiffractionVolumeLengthProcessor method) validate_diffractionvolumelengthprocessor_before() (DiffractionVolumeLengthProcessor class method) validate_energy_mask_ranges() (FitConfig class method) validate_experiment_type() (MapConfig class method) (SpecConfig class method) validate_expressionmodel_after() (ExpressionModel method) validate_fiberintegratorconfig_after() (FiberIntegratorConfig method) validate_fitconfig_after() (FitConfig method) validate_fitmodel_after() (FitModel method) validate_for_scalar_data() (PointByPointScanData method) validate_for_spec_scans() (PointByPointScanData method) validate_for_station() (PointByPointScanData method) validate_foxdendatadiscoveryreader_after() (FoxdenDataDiscoveryReader method) validate_foxdenmetadatareader_after() (FoxdenMetadataReader method) validate_foxdenprovenancereader_after() (FoxdenProvenanceReader method) validate_hklprocessor_before() (HKLProcessor class method) validate_id() (Detector class method) validate_index_range() (ImageProcessorConfig class method) validate_integratorconfig_before() (IntegratorConfig class method) validate_label() (PointByPointScanData class method) validate_latticeparameterrefinementprocessor_before() (LatticeParameterRefinementProcessor class method) validate_log_level() (RunConfig class method) validate_mapconfig_before() (MapConfig class method) validate_mask_ranges() (FitConfig class method) validate_materialconfig_after() (MaterialConfig method) validate_max() (FitParameter class method) validate_max_peak_index() (MCAEnergyCalibrationConfig class method) validate_mcadetectorcalibration_after() (MCADetectorCalibration method) validate_mcadetectorconfig_after() (MCADetectorConfig method) validate_mcadetectorconfig_before() (MCADetectorConfig class method)

validate_mcaenergycalibrationconfig_after() (MCAEnergyCalibrationConfig method) validate_mcaenergycalibrationconfig_before() (MCAEnergyCalibrationConfig class method) validate_mcaenergycalibrationprocessor_before() (MCAEnergyCalibrationProcessor class method) validate_mcatthcalibrationprocessor_before() (MCATthCalibrationProcessor class method) validate_method() (FitConfig class method) validate_min() (FitParameter class method) validate_model() (in module CHAP.common.reader) validate_nxpath() (UnstructuredToStructuredConfig class method) validate_par_file() (SpecScans class method) validate_peak_models() (MCADetectorStrainAnalysis class method) validate_pipeline_after() (Pipeline method) validate_pipelineitem_after() (PipelineItem method) validate_processor_before() (Processor class method) validate_pyfaiintegratorconfig_after() (PyfaiIntegratorConfig method) validate_pyfaiintegratorconfig_before() (PyfaiIntegratorConfig class method) validate_reader_model() (in module CHAP.reader) validate_roi() (DetectorConfig class method) validate_root() (AzimuthalIntegratorConfig class method) validate_runconfig_before() (RunConfig class method) validate_sample_orientation() (Integrate2dGIConfig class method) validate_scalar_data_expressions() (MapConfig method) validate_scan_numbers() (EddMapReader class method) (SliceNXdataReader method) (SpecScans class method) (TomoSpecProcessor class method) validate_scan_step_indices() (GiwaxsConversionConfig class method) (MCACalibrationConfig class method) validate_shape() (Detector class method) validate_signals() (UnstructuredToStructuredConfig class method) validate_spec_file() (SpecScans class method) validate_specconfig_before() (SpecConfig class method) validate_specreader_after() (SpecReader method) validate_strainanalysisprocessor_before() (StrainAnalysisProcessor class method) validate_tomospecprocessor_after() (TomoSpecProcessor method) validate_tomowriter_after() (TomoWriter method) validate_unit_ip() (Integrate2dGIConfig class method) validate_unit_oop() (Integrate2dGIConfig class method) validate_unstructured_axes() (UnstructuredToStructuredConfig class method) validate_vrange() (ImageProcessorConfig class method) validate_writer_model() (in module CHAP.writer) value (FitParameter attribute) (NumpyToNXfieldProcessor attribute) var_names (Fit property) (FitMap property) vary (FitParameter attribute) verbose (FoxdenMetadataWriter attribute) (FoxdenProvenanceWriter attribute) (FoxdenRequestConfig attribute) VerboseSafeDumper (class in CHAP.saxswaxs.server.saxswaxs_to_chap) vrange (ImageProcessorConfig attribute)

W

wall_thickness (TomoSimConfig attribute) wavelength (MultiGeometryConfig attribute), [1] Worker (class in CHAP.taskmanager) write() (FoxdenDoiWriter method) (FoxdenMetadataWriter method) (FoxdenProvenanceWriter method) (StrainAnalysisUpdateWriter method) (StreamToLogFile method) (TomoWriter method) (Writer method)

Writer (class in CHAP.writer)

X

x_bounds (TomoCombineConfig attribute) (TomoReconstructConfig attribute)

XarrayToNexusProcessor (class in CHAP.common.processor) XarrayToNumpyProcessor (class in CHAP.common.processor)

Y

y (Fit property) (FitMap property) y_bounds (TomoCombineConfig attribute) (TomoReconstructConfig attribute)

YAMLReader (class in CHAP.common.reader) ymap (FitMap property)

Z

z_bounds (TomoCombineConfig attribute) (TomoReconstructConfig attribute) zarr_tree() (FitConfig method) (FitModel method) (FitParameter method) (PyfaiIntegrationConfig method) (PyfaiIntegratorConfig method)

ZarrReader (class in CHAP.common.reader) ZarrToNexusProcessor (class in CHAP.common.processor)